View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_23 (Length: 611)
Name: NF9264_low_23
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 34780876 - 34781487
Alignment:
| Q |
1 |
aagggtcttgttgtggtaagtttcttctgattgtctttgtttcttatcttataaatacattctaattaatttaaattccattaatcgacggtgttaagta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34780876 |
aagggtcttgttgtggtaagtttcttctgattgtctttgtttcttatcttataaatacattctaattaatttaaattccattaatcaacggtgttaagta |
34780975 |
T |
|
| Q |
101 |
ttggcatgatcgtgattccattcatcatctaacatcnnnnnnntcacactagcacannnnnnngtaccaacaaactaattactaaactgaga-------- |
192 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
34780976 |
ttggcatgatcgtgattccattcatcatctaacataaaaaaaatcacactagcacatttctttgtaccaacaaactaattactaaattgagaatctcaat |
34781075 |
T |
|
| Q |
193 |
------tgttattaaactaagaaagattttaaattgtataccactg--gtaccttatttgaatatggtttagtaagttaaattatatgtactatgaacct |
284 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34781076 |
ttgagatgttattgaactaagaaagattttaaattgtataccactgtggtaccttatttgaatatggtttagtaagttaaattatatgtaatatgaacct |
34781175 |
T |
|
| Q |
285 |
tgcaatgctctaacattgatttgggtatgcaggattttttctctgcaggaacagactccaccgccgtgtctacagaatggactttatcagagctcatcaa |
384 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34781176 |
tgcaatg-tctaacattgatttgggtatgcaggattttttctctgcaggaacagactccaccgccgtgtctacagaatggactttatcagagctcatcaa |
34781274 |
T |
|
| Q |
385 |
caatcctagagtgttgaagaaagctcgagaggagattgactctgttgtgggaaaagatagactagttgatgaatcagatgttcagaatcttccttacatt |
484 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34781275 |
taatcctagagtgttgaagaaagctcgagaggagattgactctgttgtgggaaaagatagactggttgatgaatcagatgttcagaatcttccttacatt |
34781374 |
T |
|
| Q |
485 |
aaagccatcgtaaaagaagcatttcgtttgcacccaccactacctgtagtcaagagaaaatgtactcaagagtgtgagatcgacgggtatgtgattccag |
584 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||| |
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| T |
34781375 |
aaagccatcgtaaaagaagcatttcgcttgcacccaccactacctgtagtcaaaagaaaatgtacacaagaatgtgagatcgacgggtatgtggttccag |
34781474 |
T |
|
| Q |
585 |
aaggagcactaat |
597 |
Q |
| |
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||||||||||||| |
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| T |
34781475 |
aaggagcactaat |
34781487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 304 - 597
Target Start/End: Complemental strand, 34755015 - 34754722
Alignment:
| Q |
304 |
tttgggtatgcaggattttttctctgcaggaacagactccaccgccgtgtctacagaatggactttatcagagctcatcaacaatcctagagtgttgaag |
403 |
Q |
| |
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|||| ||||||||||||| |||||||| || ||||| ||||| || ||||| || |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34755015 |
tttgtgtatgcaggatttcttctctgcggggacagattccacggctgtgtcaactgaatggactttatcagagctcatcaacaatcctagagtattgaag |
34754916 |
T |
|
| Q |
404 |
aaagctcgagaggagattgactctgttgtgggaaaagatagactagttgatgaatcagatgttcagaatcttccttacattaaagccatcgtaaaagaag |
503 |
Q |
| |
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|| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| || |||| |
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| T |
34754915 |
aaggctcgagaagagattgactctgttgtgggaaaagatggactagttgatgaatcagatgttcagaatcttccttacattagagccgtcgtgaaggaag |
34754816 |
T |
|
| Q |
504 |
catttcgtttgcacccaccactacctgtagtcaagagaaaatgtactcaagagtgtgagatcgacgggtatgtgattccagaaggagcactaat |
597 |
Q |
| |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754815 |
cattccgcatgcacccaccactacctgtagtcaagagaaaatgtactcaagagtgtgagatcgacgggtatgtgattccagaaggagcactaat |
34754722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 312 - 579
Target Start/End: Complemental strand, 34762992 - 34762725
Alignment:
| Q |
312 |
tgcaggattttttctctgcaggaacagactccaccgccgtgtctacagaatggactttatcagagctcatcaacaatcctagagtgttgaagaaagctcg |
411 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||| || ||| | |||||||||||||| ||||||||||||||||||| ||||| | ||||||||| | |
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| T |
34762992 |
tgcaggatttcttctctgcagggacagattccacagctgtggcaacagaatggactttggcagagctcatcaacaatccaagagtatggaagaaagcaca |
34762893 |
T |
|
| Q |
412 |
agaggagattgactctgttgtgggaaaagatagactagttgatgaatcagatgttcagaatcttccttacattaaagccatcgtaaaagaagcatttcgt |
511 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| || || || | ||| ||| |
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| T |
34762892 |
agaagagattgactctgttgtgggaaaagatagactagttgacgaatcagatgttcagaatcttccatacattcgcgccatggtgaaggaggtattccgt |
34762793 |
T |
|
| Q |
512 |
ttgcacccaccactacctgtagtcaagagaaaatgtactcaagagtgtgagatcgacgggtatgtgat |
579 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| || |||||||||||||| | || |||||||| |
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|
| T |
34762792 |
ttgcacccaccactacccgtggtgaagagaaaatgcaccgaagagtgtgagatcaatggttatgtgat |
34762725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34755260 - 34755159
Alignment:
| Q |
1 |
aagggtcttgttgtggtaagtttcttctgattgtctttgtttcttatcttataaatacattctaattaatttaaattccattaatcgacggtgttaagta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| || || |||||||||||||||| ||| ||| | |||||||||| |
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| T |
34755260 |
aagggtcttgttgtggtaagtttattctaattgtctttgtttcttatcttctaattatatgctaattaatttaaatttcatcgatcaatagtgttaagta |
34755161 |
T |
|
| Q |
101 |
tt |
102 |
Q |
| |
|
|| |
|
|
| T |
34755160 |
tt |
34755159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 522
Target Start/End: Complemental strand, 9381572 - 9381491
Alignment:
| Q |
441 |
atagactagttgatgaatcagatgttcagaatcttccttacattaaagccatcgtaaaagaagcatttcgtttgcacccacc |
522 |
Q |
| |
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|||||||||| |||||||| || | || ||||||||||| ||| ||||||| |||||||| |||||||| | |||||||| |
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| T |
9381572 |
atagactagtagatgaatctgacggtccaaatcttccttatattcaagccataataaaagaaacatttcgtctacacccacc |
9381491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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