View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_26 (Length: 590)
Name: NF9264_low_26
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 15 - 573
Target Start/End: Complemental strand, 38625236 - 38624678
Alignment:
| Q |
15 |
atcagttcataggagccaaaggcttaaaataccagattggtggaagagatgattttcagatttctgatccatccgttctccaattacagcggcatccccg |
114 |
Q |
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| T |
38625236 |
atcagttcataggagccaaaggcttaaaataccagattggtggaagagatgattttcagatttctgatccatccgttctccaattacagcggcatccccg |
38625137 |
T |
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| Q |
115 |
aaagggaagaatatattgacacgatcacttcaaatataaaaatttaaattgagatttgatagcattctgatatgtgannnnnnnggtccttggcctctga |
214 |
Q |
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| T |
38625136 |
aaagggaagaatatattgacacgatcacttcaaatataaaaatttaaactgagatttgatagcattctgatatgtgatttttttggtccttggcctctga |
38625037 |
T |
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| Q |
215 |
cacctcacttgcattcatgatattcatctacattctctgtgcggatggcttcttttctttctggttgttttggatgaaactggacactagttgctcaagt |
314 |
Q |
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| T |
38625036 |
cacctcacttgcattcatgatattcatctacattctctgtgcggatggcttcttttctttctggttgttttggatgaaactggacactagttgcccaagt |
38624937 |
T |
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| Q |
315 |
gagaagatgtgctctcaggatttatcaaaaagccaaacactgcttgtgcatatgccacatgaaaatggttttgaagtttttgagggttactgcctgactg |
414 |
Q |
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| T |
38624936 |
gagaagatgtgctctcaggatttatcaaaaagccaaacactgcttgtgcatatgccacatgaaaatggttttgaagtttttgagggttactgcctgactg |
38624837 |
T |
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| Q |
415 |
atagaggccagtaagtaaagaagggaaaagggcatataaacaacaaaaagagattacaacagtttactgttattcaacctattagtttgtacatatttca |
514 |
Q |
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| T |
38624836 |
atagaggccagtaagtaaagaagggaaaagggcatataaacaacaaaaagagattacaacagtttactgttattcaacctattagtttgtacatatttca |
38624737 |
T |
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| Q |
515 |
ttcattgaaagagaataataaaattcctttgattatggaatttattttctatgtgatgt |
573 |
Q |
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| T |
38624736 |
ttcattgaaagagaataataaaattcctttgattatggaatttattttctatgtgatgt |
38624678 |
T |
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