View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_29 (Length: 570)
Name: NF9264_low_29
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 38574698 - 38575249
Alignment:
| Q |
1 |
agagccaattctaccttctagacatgggaagttgttggaagaacaatggtgcaccttgtgatggagatgtactaactgatgtcactagatacagtgaaat |
100 |
Q |
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| T |
38574698 |
agagccaattctaccttctagacatgggaagttgttggaagaacaatggtgcaccttgtgatggagatgtactaactgatgtcactagatacagtgaaat |
38574797 |
T |
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| Q |
101 |
gatcatcaatccagaaactccagcttggtgtagccctacaggtttaggaaattgtccaccatttcatatcacaccagataacaaaaagatattcagaaat |
200 |
Q |
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| T |
38574798 |
gatcatcaatccagaaactccagcttggtgtagccctacaggtttaggaaattgtccaccatttcatatcacaccagataacaaaaagatattcagaaat |
38574897 |
T |
|
| Q |
201 |
gacactaccaatttcccttattcagcttatcactattactgtgctccaggcaatgctcaacatttagagcaacctgttagtacttgtgatccttatagta |
300 |
Q |
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| T |
38574898 |
gacactgccaatttcccttattcagcttatcactattactgtgctccaggcaatgctcaacatttagagcaacctgttagtacttgtgatccttatagta |
38574997 |
T |
|
| Q |
301 |
atcctcaagcacaagagatagttcagttattgcctcatcctatttggggtgagtatggttatcccattaataaaggtgatggttgggttggtgatgcaag |
400 |
Q |
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| T |
38574998 |
atcctcaagcacaagagatagttcagttattgcctcatcctatttggggtgagtatggttatcccattaataaaggtgatggttgggttggtgatgcaag |
38575097 |
T |
|
| Q |
401 |
gacttgggaacttgatgttggtggcctagcaagtagactttacttctatcaggtcaatcattcaattatcactctaatattggaaacttatgagtcatca |
500 |
Q |
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| T |
38575098 |
gacttgggaacttgatgttggtggcctagcaagtagactttacttctatcaggtcaatcattcaattatcactctaatattggaaacttatgagtcatca |
38575197 |
T |
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| Q |
501 |
cattacatcacatactcattcatttgtgtctctagcaaattcgtatttatgt |
552 |
Q |
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| T |
38575198 |
cattacatcacatactcattcatttgtgtctcttgcaaattcgtatttatgt |
38575249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 30818043 - 30817996
Alignment:
| Q |
2 |
gagccaattctaccttctagacatgggaagttgttggaagaacaatgg |
49 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
30818043 |
gagccaattctacctcatggacatgggaagttgttggaagaacaatgg |
30817996 |
T |
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