View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264_low_32 (Length: 556)

Name: NF9264_low_32
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264_low_32
NF9264_low_32
[»] chr5 (6 HSPs)
chr5 (15-539)||(2210404-2210928)
chr5 (228-520)||(2198208-2198500)
chr5 (15-73)||(2198575-2198633)
chr5 (92-121)||(37455439-37455468)
chr5 (121-149)||(34384702-34384730)
chr5 (92-120)||(41330455-41330483)
[»] chr8 (2 HSPs)
chr8 (92-149)||(1961372-1961427)
chr8 (92-120)||(16983484-16983512)
[»] chr1 (2 HSPs)
chr1 (120-149)||(22540504-22540533)
chr1 (92-120)||(30678973-30679001)
[»] chr7 (3 HSPs)
chr7 (92-120)||(31502526-31502554)
chr7 (92-120)||(44350864-44350892)
chr7 (92-120)||(46517381-46517409)
[»] chr4 (2 HSPs)
chr4 (121-149)||(19447273-19447301)
chr4 (92-120)||(50164485-50164513)
[»] chr3 (1 HSPs)
chr3 (92-120)||(29388656-29388684)
[»] chr2 (1 HSPs)
chr2 (121-157)||(38464304-38464340)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 539
Target Start/End: Complemental strand, 2210928 - 2210404
Alignment:
Q  15 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaataaacagaatatgatctagttcaattttcaaagtgtagact 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2210928 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaataaacagaatatgatctagttcaattttcaaagtgtagact 2210829  T
Q  115 caca--atagtattaaagagagtgttcaaaagagagtatagctagtcttactcaatctactaattatgtacatagaa-gaagnnnnnnnngaaatgaaga 211  Q
    ||||  ||||||||||||||||            ||| ||||||||||||||||||||||||||||||||||||||| |||         ||||||||||    
T  2210828 cacacaatagtattaaagagag------------agtgtagctagtcttactcaatctactaattatgtacatagaaagaa-----aaatgaaatgaaga 2210746  T
Q  212 ttaaataaggaacgaataaattcaactcaagtcatgacagtatgaaatcgacatggaaaattga---aatgaacattgatttgcatcgaaa--------- 299  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||| ||||  ||||  ||||||||   |||||| || ||||||||||||||             
T  2210745 ttaaataaggaacgaataacttcaactcaagtcatcacactatcaaattcacat--aaaattgatgaaatgaatatagatttgcatcgaaataaagatga 2210648  T
Q  300 ----ctaaccgaaaaacatcccagcaactatcaagaccaggaataggaggaggaaaaccatctttagcgaagatgctacgataagcaggtcctcttgaag 395  Q
        ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2210647 aaaactaaccgaaaaacatcccagcaactatcaagaccaagaataggaggaggaaaaccatctttagcgaagatgctacgatacgcaggtcctcttgaag 2210548  T
Q  396 gtttatcctccgttgctgccttcgctttttcaacctcaatgatgaatcttttctgcgccatgtctcaacaacgatcgcgaagagaaaaatggttaagtta 495  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||||||||||||||    
T  2210547 gtttatcttccgttgcttccttcgctttttcaacctcaatgatgaatcttttctgcgccatggctcaacgatgatcgcgatgagaaaaatggttaagtta 2210448  T
Q  496 agcggagaatgagaaattttaaatgttatttcttagtgttctta 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2210447 agcggagaatgagaaattttaaatgttatttcttagtgttctta 2210404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 228 - 520
Target Start/End: Complemental strand, 2198500 - 2198208
Alignment:
Q  228 taaattcaactcaagtcatgacagtatgaaatcgacatggaaaattgaaatgaacattgatttgcatcgaaactaaccgaaaaacatcccagcaactatc 327  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2198500 taaattcaactcaagtcatgacactatgaaatcgacatggaaaattgaaatgaacattgatttgcatcgaaactaaccgaaaaacatcccagcaactatc 2198401  T
Q  328 aagaccaggaataggaggaggaaaaccatctttagcgaagatgctacgataagcaggtcctcttgaaggtttatcctccgttgctgccttcgctttttca 427  Q
    |||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2198400 aagaccaggaataggaggaggaaatccatccttagcgaagatactgcgatacgcaggtcctcttgaaggtttatcctccgttgctgccttcgctttttca 2198301  T
Q  428 acctcaatgatgaatcttttctgcgccatgtctcaacaacgatcgcgaagagaaaaatggttaagttaagcggagaatgagaaattttaaatg 520  Q
    ||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2198300 acctcaatgatgaatctttcctgcgccatggctcaataacgatagcgaagagaaaaatggttaagttaagcggagaatgagaaattttaaatg 2198208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 2198633 - 2198575
Alignment:
Q  15 cagagagctatgatttgcaaattagcataaaaattcaacgaaaattaaaataatttaaa 73  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| |||||    
T  2198633 cagagagctctgatttgaaaattagcataaaaattaaacgaaaattaaattaaattaaa 2198575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 37455439 - 37455468
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaata 121  Q
    ||||||||||||||||||||||||||||||    
T  37455439 gttcaattttcaaagtgtagactcacaata 37455468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 149
Target Start/End: Complemental strand, 34384730 - 34384702
Alignment:
Q  121 agtattaaagagagtgttcaaaagagagt 149  Q
    |||||||||||||||||||||||||||||    
T  34384730 agtattaaagagagtgttcaaaagagagt 34384702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 41330483 - 41330455
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaat 120  Q
    |||||||||||||||||||||||||||||    
T  41330483 gttcaattttcaaagtgtagactcacaat 41330455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 1961372 - 1961427
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaatagtattaaagagagtgttcaaaagagagt 149  Q
    ||||||||||||||||||||||  ||||||  |||| |||||||||||||||||||||    
T  1961372 gttcaattttcaaagtgtagaccaacaata--attagagagagtgttcaaaagagagt 1961427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 16983484 - 16983512
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaat 120  Q
    |||||||||||||||||||||||||||||    
T  16983484 gttcaattttcaaagtgtagactcacaat 16983512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 149
Target Start/End: Original strand, 22540504 - 22540533
Alignment:
Q  120 tagtattaaagagagtgttcaaaagagagt 149  Q
    ||||||||||||||||||||||||||||||    
T  22540504 tagtattaaagagagtgttcaaaagagagt 22540533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 30679001 - 30678973
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaat 120  Q
    |||||||||||||||||||||||||||||    
T  30679001 gttcaattttcaaagtgtagactcacaat 30678973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 31502554 - 31502526
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaat 120  Q
    |||||||||||||||||||||||||||||    
T  31502554 gttcaattttcaaagtgtagactcacaat 31502526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 44350892 - 44350864
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaat 120  Q
    |||||||||||||||||||||||||||||    
T  44350892 gttcaattttcaaagtgtagactcacaat 44350864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 46517381 - 46517409
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaat 120  Q
    |||||||||||||||||||||||||||||    
T  46517381 gttcaattttcaaagtgtagactcacaat 46517409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 19447273 - 19447301
Alignment:
Q  121 agtattaaagagagtgttcaaaagagagt 149  Q
    |||||||||||||||||||||||||||||    
T  19447273 agtattaaagagagtgttcaaaagagagt 19447301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 50164485 - 50164513
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaat 120  Q
    |||||||||||||||||||||||||||||    
T  50164485 gttcaattttcaaagtgtagactcacaat 50164513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 120
Target Start/End: Complemental strand, 29388684 - 29388656
Alignment:
Q  92 gttcaattttcaaagtgtagactcacaat 120  Q
    |||||||||||||||||||||||||||||    
T  29388684 gttcaattttcaaagtgtagactcacaat 29388656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 38464304 - 38464340
Alignment:
Q  121 agtattaaagagagtgttcaaaagagagtatagctag 157  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  38464304 agtattagagagagtgttcaaaagagagtattgctag 38464340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University