View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_35 (Length: 532)
Name: NF9264_low_35
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 25 - 511
Target Start/End: Complemental strand, 37427525 - 37427042
Alignment:
| Q |
25 |
ttgctgggattatcgttctcgcattagacgtcggtacttgtttagaagtatgaatcaaacttggtaccatgattaacttagaacagtgatatgtattatc |
124 |
Q |
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| T |
37427525 |
ttgctgggattatcgttctcgcattagacgtcggtacttgtttataagtatgaatcaaacttggtaccatgattaacttagaacagtgatatgtattatc |
37427426 |
T |
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| Q |
125 |
cttgtctctaaattaggactcttaactaaatgatgaaaattaagaaagatggtagttatattaaatctatcaataattgatattatttttacaagttgtc |
224 |
Q |
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| T |
37427425 |
cttgtctctaaattaggactcttaactaaatgatgaaaattaagaaagatggtagttatattaaatctatcaataattgatattatttttacaagttgtc |
37427326 |
T |
|
| Q |
225 |
cttcaacagagataatatatgtttatgttttcaacacattatctatttttaatgcaatcaatacaatatcttttgctgattgagaaaaaggtaaaatatt |
324 |
Q |
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| T |
37427325 |
cttcaacagagata--atatgtttatgttttcaacacattatctatttttaatgcaatcaatacaatat-ttttgctgattgagaaaaaggtacaataat |
37427229 |
T |
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| Q |
325 |
cagaggtatattggtaataaaataattaatgcaactaaaatttcaaaagagaggttatatagtgacaacaattatcttaaggatcgtggtaacatgttcc |
424 |
Q |
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| T |
37427228 |
cagaggtatattggtaataaaataattaatgcaactaaaatttcaaaaaagaggttatatagtgacaacaattatcttaaggatcttgacaacatgttac |
37427129 |
T |
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| Q |
425 |
cttactctaagaacatatgttaatgattctacgataacgaatttattaggtttgtggattattgcaaccttatgaaccttattttat |
511 |
Q |
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| T |
37427128 |
cttgccctaagaacatgtgttaatgattctacaataacgaatttattaggtgtgtggattattgtaaccttatgaaccttattttat |
37427042 |
T |
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