View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_43 (Length: 499)
Name: NF9264_low_43
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Original strand, 22371219 - 22371696
Alignment:
| Q |
8 |
gtcataccactgcttgactggtaagaatgatgcaagtggttatgcaaaggaacaannnnnnngatctttcattacatgcttcatacgagctttgaatata |
107 |
Q |
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| T |
22371219 |
gtcataccactgcttgactggtaaggatgatgcaagtggttatgcaaaggaacaatttttttgatctttcattacatgcttcatacgagctttgaatata |
22371318 |
T |
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| Q |
108 |
tgtctgatcgttgttattttttgctcaatctaataggtctattggataccatccaatccatttgatgagctggagaaggttgtcaacaagatgaggccga |
207 |
Q |
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| T |
22371319 |
tgtctgatcgttgttattctttgctcaatcttataggtctattggataccatccaatccatttgatgagctggagaaggttgtcaacaagatgaggccga |
22371418 |
T |
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| Q |
208 |
aatatatttctaaattatgttatcgtgctacttggttgttgagcattttcatcatgtattttcccctttgttgtcgaacgagtagttgtttaattctaat |
307 |
Q |
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| T |
22371419 |
aatatatttctaaattctgttatcgtgctacttggttgttgagcattttcatcatgtattttcccctttgttgtcgaacgagtagttgtttaattctaat |
22371518 |
T |
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| Q |
308 |
cctaccttttctaattgttgtcctaattaatgaagtatcaaacatattttcctttgcaaaggggctgttattgtttggaagctgaacaatacgacatttg |
407 |
Q |
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| T |
22371519 |
cctaccttttctaattgttgtcctaattaatgaagtatcaaacatattttcctttgcaaaggggctgttattgtttggaagctgaacaatacgacatttg |
22371618 |
T |
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| Q |
408 |
attagttgttgttttctaa--nnnnnnnnnccaaactctgttagaaaacaataccgtgatttcatatttcctgtattt |
483 |
Q |
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| T |
22371619 |
attagttgttgttttctaatttttttttttccaaactctgttagaaaacaataccgtgatttcatatttcctgtattt |
22371696 |
T |
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