View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_47 (Length: 483)
Name: NF9264_low_47
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 19160588 - 19160887
Alignment:
| Q |
1 |
aggaacacaatcaacatatatagttttgatatagcatgtcttctgaacaagatgagatacctattaacttttataaaacatgcataaacctgccgctgcg |
100 |
Q |
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| T |
19160588 |
aggaacacaatcaacatatatagttttgatatagcatgtcttccgaacaagatgagatacctattaactcttataaaacatgcataaacctgccgctgcg |
19160687 |
T |
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| Q |
101 |
ggtagattcggtggaaccgtcgcatggaccgatggattcaggcgtgatttctgtaaattctttgccggtgttgcaggtgcaaatgtgtataatcttcttt |
200 |
Q |
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| T |
19160688 |
ggtagattcgctggaaccgtcgcatggaccgatggattcaggcgtgatttttgtaaattctttgccggtgttgcaggtgcaaatgtgtataatcttcttt |
19160787 |
T |
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| Q |
201 |
ggaacttttttgtttaaatgtatattccgtcgttttggaatccccaggtttacttctatgagcattgtaagtccaattatgttcctgtattgccattgta |
300 |
Q |
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| T |
19160788 |
ggaacttttttgtttaaatgtatattccgtcgttttggaatccccaggtttacttctatgagcattgtaagtccaattatgttcctgtattgccattgta |
19160887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 362 - 467
Target Start/End: Original strand, 19160949 - 19161051
Alignment:
| Q |
362 |
cttcttcgaagagataacaagttgttactattcgtaatgactaatatgcagcaccgacaattaatattgaagatatgattattggtgtccgatatatgtc |
461 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19160949 |
cttcttggaagagataacaagttgttactattcgtaatgactaatatgcagcaccgacaattaatattgaagatatg---attggtgtccgatatatgtc |
19161045 |
T |
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| Q |
462 |
tgttgt |
467 |
Q |
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| T |
19161046 |
tgttgt |
19161051 |
T |
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