View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_52 (Length: 477)
Name: NF9264_low_52
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 5948233 - 5948364
Alignment:
| Q |
1 |
gtttgacccttcgaattcggtttatttcacctatttattcccgtattgtcaaaagacatgcatttagtgtaactttataaatcaatctttcctccacctg |
100 |
Q |
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| T |
5948233 |
gtttgacccttcgaattcggtttatttcaccaatttattcccgtattgtcaaaagacatgcatttagtgtaactttataaatcaatctttcctccacctg |
5948332 |
T |
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| Q |
101 |
gacgaattactaattagaacttgaagaataaatga |
135 |
Q |
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| T |
5948333 |
gacgagttac---ttagaacttgaagaataaatga |
5948364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 439
Target Start/End: Original strand, 5953886 - 5954034
Alignment:
| Q |
291 |
taagtcat-aaattcatgatattaacataatattacatcctataatattgtttccaatgcaagtactca--tatattgaaaatgatctgaaataattcat |
387 |
Q |
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| T |
5953886 |
taagtcatcaaattcatgatattaacata---ttacatccttcaattttatttccaatgcaggcactcacatatattgaaatggattggaaacaattcat |
5953982 |
T |
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| Q |
388 |
gcttgatgaagatctgattgttgataaaattaggaaaaactgtttttgagag |
439 |
Q |
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| T |
5953983 |
gcttgatggagaagtgattgttagcaaaactaggaaaaactattttagagag |
5954034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 431 - 461
Target Start/End: Original strand, 5948389 - 5948419
Alignment:
| Q |
431 |
ttttgagagataagttcttgacccttggtta |
461 |
Q |
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| T |
5948389 |
ttttgagagataagttcttgacccttggtta |
5948419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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