View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_58 (Length: 451)
Name: NF9264_low_58
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 93 - 436
Target Start/End: Original strand, 3332658 - 3333001
Alignment:
| Q |
93 |
atggtgaagatgaagatctcttgctgtgtggaaaggtggaggaagtgaatgtccatgtgatgttatttgatccataattaatctctataatcgatatgtg |
192 |
Q |
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| T |
3332658 |
atggtgaagatgaagatctcttgctgtgtggaaaggtggaggaagtgaatgtccatgtgatgttatttgatccataattaatctctataatcgatatgtg |
3332757 |
T |
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| Q |
193 |
ctgctgagatgagtattctttcttcaaatatacttaattcctttgcagtagaatatagaaagcacacaagaagatgcaactggattgaagaattctaagt |
292 |
Q |
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| T |
3332758 |
ctgctgagatgagtattctttcttcaaatatacttaattcctttgcaatagaatatagaaagcacacaagaagatgcaactggattgaagaattctaagt |
3332857 |
T |
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| Q |
293 |
aatacaactaacctaaaaatcaattgaagagaacaagttgatacttatatctccttccttgttatctttgagtatgatgatccatcttaattaattcttg |
392 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332858 |
aatacaactaaccaaaaaatcaattgaagagaacaagttgatacttatatctccttccttgttatctttgagtatgatgatccatcttaattaattcttg |
3332957 |
T |
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| Q |
393 |
ctaatttgatcccaagcagaattagttgaattgattcttcctct |
436 |
Q |
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| T |
3332958 |
ctaatttgatcccaagcagaattagttgaattgattcttcctct |
3333001 |
T |
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