View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_6 (Length: 1032)
Name: NF9264_low_6
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_6 |
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| [»] scaffold1113 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 768; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 219 - 1014
Target Start/End: Original strand, 32684284 - 32685079
Alignment:
| Q |
219 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa |
318 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684284 |
cctctaaaccagcagatctggcagctgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa |
32684383 |
T |
|
| Q |
319 |
gacctcattgcgttatattgtgatagtcaaagtgtcatttacataacatctattgtattcaatgaaagaactaagcatttagaaattgacatatagcttg |
418 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684384 |
gacctcattgcgttatattttgatagtcaaagtgtcatttacataacatctatattattcaatgaaagaactaagcatttagaaattgacatatagcttg |
32684483 |
T |
|
| Q |
419 |
ctgaacaagttacatcataaaacagttggcaaagaaacttacatctcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684484 |
ctgaacaagttacatcataaaacagttggcaaagaaacttacatctcagtatacttagttggagagcttgtaactaacattccctctcaagattgatgaa |
32684583 |
T |
|
| Q |
519 |
aactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagtgtatcattttctagttaacatgatcattttctttcttgttcat |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684584 |
aactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagtgtatcattttctagttaacatgatcattttctttcttgttcat |
32684683 |
T |
|
| Q |
619 |
tctctattctgattttcttcatactttccattcagccttaaacatgatttttgcttgagacatcacaaacctcgaatcataagaatctgagactactaaa |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684684 |
tctctattctgattttcttcatactttccattcagccttaaacatgatttttgcttgagacatcacaaacctcgaatcataagaatctgagactactaaa |
32684783 |
T |
|
| Q |
719 |
gtgttggcggatgataccgctttcatagatctaactcatcaattcgaaaagaaatgcttaaattatttgaataaaaattttgccacgccattctagaaat |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684784 |
gtgttggcggatgataccgctttcatagatctaactcatcaattcgaaaagaaatgcttaaattatttgaataaaaattttgccacgccattctagaaat |
32684883 |
T |
|
| Q |
819 |
taagaaaccagcagttggattggagttgttgaatttgagttctttaatattaattaacctgtaaaccagcagctggattggagttgttgaatgcagcgcg |
918 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
32684884 |
taagaaaccagcagttggattggagttgttgaatttgagttctttaatattaattaacctataaaccagcagttggattggagttgttgaatgcagcgcg |
32684983 |
T |
|
| Q |
919 |
gactgccctggataaacttgaaaagcagaaagaagctgattttaaaagggttacagttgaaattaagaaactgagagttcaagttcaaaagaagat |
1014 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684984 |
gactgccctggataaaattgaaaagcagaaagaagctgattttaaaagggttacagttgaaattaagaaactgagagttcaagttcaaaagaagat |
32685079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 276 - 663
Target Start/End: Complemental strand, 32560082 - 32559715
Alignment:
| Q |
276 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattgtgatagtcaaagtgtcatttacataacatctattgta |
375 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
32560082 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcgttgcgttatattgtgatagtgaaagtgtcatttacataacatgcattgta |
32559983 |
T |
|
| Q |
376 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaacaagttacatcataaaacagttggcaaagaaacttacatctcagtatactta |
475 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559982 |
ttcaatgaaagaactaagcatttagaaattgacatatagcttgctgaataagttacatcataaaacagttggcaaagaaacttacatctcagtatactta |
32559883 |
T |
|
| Q |
476 |
gttggagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagt |
575 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32559882 |
gttagagagcttgtaactaacattccctctcaagattgatgaaaactagctagatcgtgattgcatagacgaaaactacaactatataagatgcatcagt |
32559783 |
T |
|
| Q |
576 |
gtatcattttctagttaacatgatcattttctttcttgttcattctctattctgattttcttcatactttccattcagccttaaacat |
663 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32559782 |
gtatcatt--------------------ttctttcttgttcattctctattctgattttcttcatacttttcattcagccttaaacat |
32559715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 661 - 817
Target Start/End: Complemental strand, 32559694 - 32559538
Alignment:
| Q |
661 |
catgatttttgcttgagacatcacaaacctcgaatcataagaatctgagactactaaagtgttggcggatgataccgctttcatagatctaactcatcaa |
760 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32559694 |
catgatttttgcttgagacatcacaaacctcgaatcataagaatccgagactactaaagtgttagcggatgataccgctttcatagatctaactcatcaa |
32559595 |
T |
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| Q |
761 |
ttcgaaaagaaatgcttaaattatttgaataaaaattttgccacgccattctagaaa |
817 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32559594 |
ttcgaaaagaaatgcttaaattatttgaataaaatttttgccacgccattctagaaa |
32559538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 32684079 - 32684226
Alignment:
| Q |
14 |
cagagataggggaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgct |
113 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684079 |
cagagatagggaaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatgct |
32684178 |
T |
|
| Q |
114 |
gatttagcattcaaggcaagtttttctctaacaataattttgattcta |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684179 |
gatttagcattcaaggcaagtttttctctaacaataattttgattcta |
32684226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 851 - 1014
Target Start/End: Original strand, 32683211 - 32683369
Alignment:
| Q |
851 |
atttgagttctttaatattaattaacctgtaaaccagcagctggattggagttgttgaatgcagcgcggactgccctggataaacttgaaaagcagaaag |
950 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| || |||||||||||| || |
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| T |
32683211 |
atttgagttctttaatattaattaacctataaaccagcag-----ttggagttgttgaatgcagcgcgtactgccctggatgaaattgaaaagcagagag |
32683305 |
T |
|
| Q |
951 |
aagctgattttaaaagggttacagttgaaattaagaaactgagagttcaagttcaaaagaagat |
1014 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32683306 |
aagctgattttaaaagggctgcagttgaaattaagaaactgagagttcaagttcaaaagaagat |
32683369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 219 - 313
Target Start/End: Original strand, 32692182 - 32692276
Alignment:
| Q |
219 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaag |
313 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32692182 |
cctctaaaccagcagatctggcagctgaattgtgtgctgaaatgcaaggttgaatataaagaggaggttgacaatgaccgtaaagaactttgaag |
32692276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 851 - 988
Target Start/End: Complemental strand, 33011092 - 33010960
Alignment:
| Q |
851 |
atttgagttctttaatattaattaacctgtaaaccagcagctggattggagttgttgaatgcagcgcggactgccctggataaacttgaaaagcagaaag |
950 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||| || |||| ||||| || ||||||||||||| | |
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| T |
33011092 |
atttgagttctttaatattaattaacctataaaccagcag-----ttgaagttggcgaatgcagcgctgaatgccttggatgaaattgaaaagcagaagg |
33010998 |
T |
|
| Q |
951 |
aagctgattttaaaagggttacagttgaaattaagaaa |
988 |
Q |
| |
|
|| ||||||||||||||| | |||||||||||||||| |
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| T |
33010997 |
aatctgattttaaaagggatgaagttgaaattaagaaa |
33010960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 32692090 - 32692124
Alignment:
| Q |
127 |
aggcaagtttttctctaacaataattttgattcta |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
32692090 |
aggcaagtttttctctaacaataattttgattcta |
32692124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 890
Target Start/End: Original strand, 28711086 - 28711125
Alignment:
| Q |
851 |
atttgagttctttaatattaattaacctgtaaaccagcag |
890 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||| |
|
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| T |
28711086 |
atttgagttctttaatattaattaacctctaaacctgcag |
28711125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 134 - 61
Alignment:
| Q |
88 |
gtagacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattcta |
161 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
134 |
gtagacgcgtgaatgagccggatgctgatttagcattcgaggcaagtttttctctaacaataattttgattcta |
61 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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