View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264_low_60 (Length: 448)

Name: NF9264_low_60
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264_low_60
NF9264_low_60
[»] chr4 (3 HSPs)
chr4 (18-346)||(13130164-13130492)
chr4 (262-344)||(12609371-12609452)
chr4 (99-161)||(40117938-40118000)
[»] chr3 (6 HSPs)
chr3 (57-268)||(13592179-13592390)
chr3 (58-250)||(8772044-8772236)
chr3 (123-264)||(19165750-19165891)
chr3 (73-215)||(19577683-19577825)
chr3 (279-333)||(19577836-19577889)
chr3 (300-333)||(8772013-8772046)
[»] chr1 (1 HSPs)
chr1 (82-333)||(18828843-18829093)
[»] chr7 (5 HSPs)
chr7 (55-294)||(20580899-20581138)
chr7 (83-237)||(13251116-13251270)
chr7 (260-333)||(19202934-19203006)
chr7 (138-255)||(22523381-22523499)
chr7 (276-332)||(1586983-1587038)
[»] chr2 (5 HSPs)
chr2 (73-287)||(25533676-25533890)
chr2 (72-204)||(32442530-32442662)
chr2 (277-333)||(16816206-16816261)
chr2 (277-333)||(16855363-16855418)
chr2 (261-333)||(28923007-28923078)
[»] chr8 (4 HSPs)
chr8 (260-345)||(24720857-24720941)
chr8 (260-333)||(26828280-26828352)
chr8 (260-322)||(14998308-14998369)
chr8 (260-333)||(25232132-25232204)
[»] chr6 (3 HSPs)
chr6 (145-217)||(28587366-28587438)
chr6 (124-200)||(12973408-12973485)
chr6 (260-333)||(21842993-21843065)
[»] chr5 (3 HSPs)
chr5 (272-333)||(25404972-25405032)
chr5 (261-333)||(19054586-19054657)
chr5 (261-332)||(16783291-16783361)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 13130164 - 13130492
Alignment:
Q  18 agagtcttggtgttccataaggaggacaagcacatactctgaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttc 117  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13130164 agagtcttggtgttccgtaaggaggacaagcacataccctgaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttc 13130263  T
Q  118 cttttgaacaagagaaagatgaaggatgatgtgttctttctttcatacaagcaaccctaagaggatcgaggcgtcgagctaataaacataaaatgaagtg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  13130264 cttttgaacaagagaaagatgaaggatgatgtgttctttctttcatacaagccaccctaagaggatcgaggcgtcgagctaataaacgtaaaatgaagtg 13130363  T
Q  218 ttgcatgggaggcaacccatgggaaccgtcgggctcaagacgcaaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaac 317  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13130364 ttgcatgggaggcaatccatgggaaccgtcgggctcaagacgtaaaagaagtgttgggtaggaggtaacctattgatcgtcggggactcagacgttaaac 13130463  T
Q  318 aagcgttgaatgggagacgatccattatc 346  Q
    || || ||||||||||  || ||||||||    
T  13130464 aaacgctgaatgggaggtgacccattatc 13130492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 12609452 - 12609371
Alignment:
Q  262 aaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggagacgatccatta 344  Q
    ||||||||| | ||||||||  |||||||||| ||||| | ||||||||||||| ||||||||||||||||| ||||||||||    
T  12609452 aaagaagcgcttgataggagacaacctattgaccgtcgag-actcagacgttaaccaagcgttgaatgggaggcgatccatta 12609371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 40118000 - 40117938
Alignment:
Q  99 tgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttctttc 161  Q
    ||||||||||||||| ||||| || |||||||| || | |||||| |||||||||||||||||    
T  40118000 tgccaaattcatggaattcctgttaaacaagaggaaaaggaaggaggatgtgttctttctttc 40117938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 57 - 268
Target Start/End: Complemental strand, 13592390 - 13592179
Alignment:
Q  57 tgaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttcttt 156  Q
    |||||||||| |||| |||| |||| |||||||||  |||  ||||||||||||||||||||||  |||||||||||| | | |||||||||||||||||    
T  13592390 tgaaatccttttgataggaggatgttaacacttaccactctatgccaaattcatggagttccttccgaacaagagaaaaagggaggatgatgtgttcttt 13592291  T
Q  157 ctttcatacaagcaaccctaagaggatcgaggcgtcgagctaataaacataaaatgaagtgttgcatgggaggcaacccatgggaaccgtcgggctcaag 256  Q
    |||||||| | || ||||||| |||||| ||||||| |||||||| || | ||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  13592290 ctttcatataggccaccctaacaggatcaaggcgtcaagctaatagacgtcaaatgaagtattgcatgggaggcaacccatgggaaccgttgggctcaag 13592191  T
Q  257 acgcaaaagaag 268  Q
    ||| ||||||||    
T  13592190 acgtaaaagaag 13592179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 250
Target Start/End: Complemental strand, 8772236 - 8772044
Alignment:
Q  58 gaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttc 157  Q
    ||||||||  ||||||||||||||||||||||||  |||  ||||||| ||||||||||||||   ||||||||||||| ||| ||||||||||||||||    
T  8772236 gaaatcctactgatgggagcatgtgaacacttaccactctatgccaaactcatggagttccttccaaacaagagaaagaggaaagatgatgtgttctttc 8772137  T
Q  158 tttcatacaagcaaccctaagaggatcgaggcgtcgagctaataaacataaaatgaagtgttgcatgggaggcaacccatgggaaccgtcggg 250  Q
    |||  || |||| ||||||| ||||| ||||||| ||||||||||   | | || ||| | |||||||||||||| ||||||||||| |||||    
T  8772136 ttttgtataagccaccctaacaggattgaggcgttgagctaataattgttatataaagcgctgcatgggaggcaatccatgggaaccttcggg 8772044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 264
Target Start/End: Original strand, 19165750 - 19165891
Alignment:
Q  123 gaacaagagaaagatgaaggatgatgtgttctttctttcatacaagcaaccctaagaggatcgaggcgtcgagctaataaacataaaatgaagtgttgca 222  Q
    |||||||||||  | ||||||||||||||||||||||| ||||| |  | ||||| ||||  ||| ||||||||||||| || | |||||||| | ||||    
T  19165750 gaacaagagaagaaggaaggatgatgtgttctttcttttatacatgtcagcctaacaggactgagtcgtcgagctaatagacgttaaatgaagcgctgca 19165849  T
Q  223 tgggaggcaacccatgggaaccgtcgggctcaagacgcaaaa 264  Q
    |||||||||||||||||||||  || ||||||||||| ||||    
T  19165850 tgggaggcaacccatgggaactatcaggctcaagacgtaaaa 19165891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 19577683 - 19577825
Alignment:
Q  73 ggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttctttcatacaagcaac 172  Q
    |||||||| ||||||||| |||| |||   || ||||||||||||||    ||||||||||||| |||||||  |||||||||||||||||  |||| ||    
T  19577683 ggagcatgggaacacttaattcttcttaaaaagttcatggagttcctccctaacaagagaaagaagaaggattgtgtgttctttctttcatttaagccac 19577782  T
Q  173 cctaagaggatcgaggcgtcgagctaataaacataaaatgaag 215  Q
    ||||| ||||| | ||||||||||||||| || | ||||||||    
T  19577783 cctaacaggattggggcgtcgagctaatagacgttaaatgaag 19577825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 19577836 - 19577889
Alignment:
Q  279 gaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    |||| |||||||||| |||| || |||||||||||||||||||| ||||||||||    
T  19577836 gaggcaacctattgaccgtctgg-actcagacgttaaacaagcgctgaatgggag 19577889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 8772046 - 8772013
Alignment:
Q  300 gggactcagacgttaaacaagcgttgaatgggag 333  Q
    |||||||||| |||||||||||||||||||||||    
T  8772046 gggactcagatgttaaacaagcgttgaatgggag 8772013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 82 - 333
Target Start/End: Complemental strand, 18829093 - 18828843
Alignment:
Q  82 gaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttctttcatacaagcaaccctaagagg 181  Q
    ||||||||| |||||||| | || |||||||||||||||  |||||||||||||| ||||| ||||||||| ||||||||||| |||| ||||||| |||    
T  18829093 gaacacttaattctccttacaaagttcatggagttccttcggaacaagagaaagaggaagggtgatgtgttatttctttcatataagccaccctaacagg 18828994  T
Q  182 atcgaggcgtcgagctaataaacataaaatgaagtgttgcatgggaggcaacccatgggaaccgtcgggctcaagacgcaaaagaagcgttggataggag 281  Q
    ||||||||||| || ||||| || | |||||||| |  ||||||||||||||| |||||||||||| | || |||||| |||||||||| || |||||||    
T  18828993 atcgaggcgtcaagataatagacgttaaatgaagcgccgcatgggaggcaacctatgggaaccgtcagacttaagacgtaaaagaagcgctgaataggag 18828894  T
Q  282 gtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    | ||||||||||  ||  |||| |||||||||||||||||| ||||||||||    
T  18828893 gcaacctattgagagt-tgggaatcagacgttaaacaagcgctgaatgggag 18828843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 55 - 294
Target Start/End: Complemental strand, 20581138 - 20580899
Alignment:
Q  55 tctgaaatccttatgatgggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttct 154  Q
    |||||||||||| |||||| || ||||||||||||||  |||  || |||||||||||||||||||  |||||||||||||| ||||| |||||||||||    
T  20581138 tctgaaatccttttgatggaaggatgtgaacacttaccactctatgtcaaattcatggagttccttccgaacaagagaaagaggaaggttgatgtgttct 20581039  T
Q  155 ttctttcatacaagcaaccctaagaggatcgaggcgtcgagctaataaacataaaatgaagtgttgcatgggaggcaacccatgggaaccgtcgggctca 254  Q
    |||||||||||| || ||||||||| |||| ||| |||||||||||| || | ||||| || | |||||||| | |||||||||| |||| ||||| |||    
T  20581038 ttctttcatacaggccaccctaagatgatcaaggggtcgagctaatagacgttaaatggagcgatgcatgggcgacaacccatggaaaccatcgggatca 20580939  T
Q  255 agacgcaaaagaagcgttggataggaggtaacctattgat 294  Q
    | ||| |||||||||| ||  ||||| | |||||||||||    
T  20580938 atacgtaaaagaagcgctgagtaggatgcaacctattgat 20580899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 83 - 237
Target Start/End: Original strand, 13251116 - 13251270
Alignment:
Q  83 aacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttctttcatacaagcaaccctaagagga 182  Q
    |||||||| |||||||||| ||||||||||||||||||   ||||||||||||| ||||||||||||||||||| ||||||| |||| ||| ||| ||||    
T  13251116 aacacttaattctccttgcaaaattcatggagttccttccaaacaagagaaagaggaaggatgatgtgttctttatttcatataagccaccgtaatagga 13251215  T
Q  183 tcgaggcgtcgagctaataaacataaaatgaagtgttgcatgggaggcaacccat 237  Q
    |||||| |||||||||||| || | |||||||| | |||||||||||||||||||    
T  13251216 tcgaggtgtcgagctaatagacgttaaatgaagcgctgcatgggaggcaacccat 13251270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 19203006 - 19202934
Alignment:
Q  260 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    |||||||||||| | |||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  19203006 caaaagaagcgtcgaataggaggcaacctattgaccgtcggg-actcagacgttaaacaagcgctgaatgggag 19202934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 255
Target Start/End: Original strand, 22523381 - 22523499
Alignment:
Q  138 gaaggatgatgtgttctttctttcatacaagcaaccctaagag-gatcgaggcgtcgagctaataaacataaaatgaagtgttgcatgggaggcaaccca 236  Q
    |||||| ||| |||| |||||||||||||||| ||||||| || | | |||||| | | |||||| || | |||  ||||||||||||||||||||||||    
T  22523381 gaaggaggatatgttatttctttcatacaagccaccctaacagtggttgaggcgacaaactaatagacgttaaacaaagtgttgcatgggaggcaaccca 22523480  T
Q  237 tgggaaccgtcgggctcaa 255  Q
    || || ||||| |||||||    
T  22523481 tgagatccgtcaggctcaa 22523499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 1587038 - 1586983
Alignment:
Q  276 taggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatggga 332  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  1587038 taggaggcaacctattgatcgtcggg-actgagacgttaaacaagcgctgaatggga 1586983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 73 - 287
Target Start/End: Complemental strand, 25533890 - 25533676
Alignment:
Q  73 ggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagagaaagatgaaggatgatgtgttctttctttcatacaagcaac 172  Q
    |||||||| ||||||||| |||| ||| | || |||||| ||||||||   ||||||||||||| ||||||||||||||||||||||||||| |||| ||    
T  25533890 ggagcatgggaacacttaattcttcttacaaagttcatgaagttccttcctaacaagagaaagaagaaggatgatgtgttctttctttcatataagccac 25533791  T
Q  173 cctaagaggatcgaggcgtcgagctaataaacataaaatgaagtgttgcatgggaggcaacccatgggaaccgtcgggctcaagacgcaaaagaagcgtt 272  Q
    ||||| |||||| ||||||| |||||||| || | |||||||| | |||||||||||||||| |||||| | ||| | ||||||||| |||||||||| |    
T  25533790 cctaacaggatcaaggcgtcaagctaatagacgttaaatgaagcgctgcatgggaggcaacctatgggacctgtcagactcaagacgtaaaagaagcgct 25533691  T
Q  273 ggataggaggtaacc 287  Q
    | || ||||| ||||    
T  25533690 gaatgggaggcaacc 25533676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 32442530 - 32442662
Alignment:
Q  72 gggagcatgtgaacacttacttctccttgccaaattcatggagttccttttgaacaagag-aaagatgaaggatgatgtgttctttctttcatacaagca 170  Q
    |||||||||||||||||||  ||||  |||||||||||||||  |||||   ||||| || ||||| ||||||||||||||||||||||||||||||||     
T  32442530 gggagcatgtgaacacttatatctctatgccaaattcatggacatccttccaaacaacaggaaaga-gaaggatgatgtgttctttctttcatacaagcc 32442628  T
Q  171 accctaagaggatcgaggcgtcgagctaataaac 204  Q
    ||||||| ||| | ||||||||||||||| ||||    
T  32442629 accctaatagggttgaggcgtcgagctaacaaac 32442662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 16816261 - 16816206
Alignment:
Q  277 aggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    |||||| |||||||||||| ||||| ||| |||||||||||||||| ||||||||||    
T  16816261 aggaggaaacctattgatcatcggg-actaagacgttaaacaagcgctgaatgggag 16816206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 16855418 - 16855363
Alignment:
Q  277 aggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    |||||| |||||||||||| ||||| ||| |||||||||||||||| ||||||||||    
T  16855418 aggaggaaacctattgatcatcggg-actaagacgttaaacaagcgctgaatgggag 16855363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 28923078 - 28923007
Alignment:
Q  261 aaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    |||||||| | || ||||||||  ||||||| ||||||||| ||||||||||||||||| |  ||||||||||    
T  28923078 aaaagaagtgatgaataggaggccacctattaatcgtcggg-actcagacgttaaacaaacactgaatgggag 28923007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 345
Target Start/End: Original strand, 24720857 - 24720941
Alignment:
Q  260 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggagacgatccattat 345  Q
    |||||||||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||| | ||| |||||| | |||||||    
T  24720857 caaaagaagcgttgaataggaggcaacttattgaccgtc-gggactcagacgttaaacaagcgcttaataggagacaacccattat 24720941  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 26828280 - 26828352
Alignment:
Q  260 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    |||||||||||||  |||||||| |||||||||| |||| || ||||| |||||||||||||||||||||||||    
T  26828280 caaaagaagcgttaaataggaggcaacctattgaccgtcagg-actcatacgttaaacaagcgttgaatgggag 26828352  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 14998369 - 14998308
Alignment:
Q  260 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcg 322  Q
    ||||||||| |||| |||||||  |||||||||| ||||||| | ||||||||||||||||||    
T  14998369 caaaagaagtgttgaataggagacaacctattgaccgtcgggaa-tcagacgttaaacaagcg 14998308  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 25232204 - 25232132
Alignment:
Q  260 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    |||| ||||||||| |||||| | |||||||||| |||| || ||||| | |||||||||| ||||||||||||    
T  25232204 caaatgaagcgttgaataggatgcaacctattgaccgtcagg-actcaaatgttaaacaagtgttgaatgggag 25232132  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 28587366 - 28587438
Alignment:
Q  145 gatgtgttctttctttcatacaagcaaccctaagaggatcgaggcgtcgagctaataaacataaaatgaagtg 217  Q
    |||||||||| ||||||||| |||| ||||||| ||||| ||||||||||||||||| || | ||||||||||    
T  28587366 gatgtgttctctctttcatataagccaccctaacaggattgaggcgtcgagctaatagacgttaaatgaagtg 28587438  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 12973485 - 12973408
Alignment:
Q  124 aacaagagaaagatgaaggatgatgtgttctttctttcatacaagcaaccctaaga-ggatcgaggcgtcgagctaat 200  Q
    |||||| | |||||||||| |||||||| |||||| || || |||| ||||||| | || ||||||||||||||||||    
T  12973485 aacaagtggaagatgaagggtgatgtgtgctttctatcctataagccaccctaacaagggtcgaggcgtcgagctaat 12973408  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 21842993 - 21843065
Alignment:
Q  260 caaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    ||||||||||  || |||||||| |||||||||| ||||  | |||||||||||||||||||| |||| |||||    
T  21842993 caaaagaagcactgaataggaggcaacctattgaccgtctag-actcagacgttaaacaagcgctgaaagggag 21843065  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 25404972 - 25405032
Alignment:
Q  272 tggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    ||||||||||| |||||||||| | ||||| | |||||||||||||||| ||||||||||||    
T  25404972 tggataggaggaaacctattgaccatcggg-attcagacgttaaacaagtgttgaatgggag 25405032  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 19054657 - 19054586
Alignment:
Q  261 aaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatgggag 333  Q
    |||||||||| ||||||||||  || ||||||| || | |||||||||||||||||||| || ||||||||||    
T  19054657 aaaagaagcgctggataggagacaatctattgaccg-ctgggactcagacgttaaacaaacgctgaatgggag 19054586  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 16783291 - 16783361
Alignment:
Q  261 aaaagaagcgttggataggaggtaacctattgatcgtcggggactcagacgttaaacaagcgttgaatggga 332  Q
    |||||||||| || |||||||| |||||||| | ||||||| ||||||||||| |||||||| |||| ||||    
T  16783291 aaaagaagcgctgaataggaggcaacctattaaccgtcggg-actcagacgttgaacaagcgctgaagggga 16783361  T

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