View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264_low_62 (Length: 433)

Name: NF9264_low_62
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264_low_62
NF9264_low_62
[»] chr1 (1 HSPs)
chr1 (14-419)||(26273559-26273966)
[»] chr7 (3 HSPs)
chr7 (96-180)||(14088688-14088772)
chr7 (96-180)||(14398706-14398790)
chr7 (91-142)||(36282450-36282501)
[»] chr3 (4 HSPs)
chr3 (91-178)||(20610006-20610093)
chr3 (91-142)||(37382976-37383027)
chr3 (91-142)||(43135207-43135258)
chr3 (91-157)||(17036199-17036265)
[»] chr2 (2 HSPs)
chr2 (26-77)||(19952478-19952529)
chr2 (96-182)||(19952543-19952629)
[»] chr6 (1 HSPs)
chr6 (106-159)||(4231756-4231809)
[»] chr5 (2 HSPs)
chr5 (96-152)||(1279773-1279829)
chr5 (106-174)||(42615062-42615130)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 26273559 - 26273966
Alignment:
Q  14 gcagagagctggagaagaacgtgtttctgctgtgcgcgtgtgaaaatttttagaatttgcctaannnnnnnnnnnnnaagttggttaattggctattggg 113  Q
    |||||||| |||||||||||||||||||||||||||||||||| || ||| |||||||||||||             |||||||||||||||||||||||    
T  26273559 gcagagagttggagaagaacgtgtttctgctgtgcgcgtgtgagaaatttcagaatttgcctaattttttttttt--aagttggttaattggctattggg 26273656  T
Q  114 ttgggccatatataaagaaagtatcgattaagtacgggcgagtgcccagggtaggcgggtggtggaaccgcatatggtgaggtattttagtctaaagctg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||    
T  26273657 ttgggccatatataaagaaagtatcgattaagtacgggcgagtgtccagggtcgtcggatggtggaaccgcatgtggtgaggtattttagtctaaagctg 26273756  T
Q  214 aagggtgcacgagaatgtgtagcannnnnnnn----atataatttaatgttaactcatcaatatatcaatttatattccctcaaaaataaaaataaatat 309  Q
    |||||||||||||||||||| |||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26273757 aagggtgcacgagaatgtgtcgcattttttttttttatataatttaatgttaactcatcaatatatcaatttatattccctcaaaaataaaaataaatat 26273856  T
Q  310 catttttgtgtgtctcccatgacaactaaacatgcacatcaaaaaatatcttgagaagcaatccctcattacattagaccttatttttgtaggaaccttg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  26273857 catttttgtgtgtctcccatgacaactaaacatgcacatcaaaaaatatcttgagaagcaatccctcattacatttgactttatttttgtaggaaccttg 26273956  T
Q  410 ctagtaattg 419  Q
    ||||||||||    
T  26273957 ctagtaattg 26273966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 14088772 - 14088688
Alignment:
Q  96 ggttaattggctattgggttgggccatatataaagaaagtatcgattaagtacgggcgagtgcccagggtaggcgggtggtggaa 180  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||| ||  ||||| ||||||| |||| | ||||||||||||    
T  14088772 ggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 14088688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 14398790 - 14398706
Alignment:
Q  96 ggttaattggctattgggttgggccatatataaagaaagtatcgattaagtacgggcgagtgcccagggtaggcgggtggtggaa 180  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||| ||  ||||| ||||||| |||| | ||||||||||||    
T  14398790 ggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 14398706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 36282450 - 36282501
Alignment:
Q  91 aagttggttaattggctattgggttgggccatatataaagaaagtatcgatt 142  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||||    
T  36282450 aagtgggttaatgggctattggattgggccaaatatgaagaaagtatcgatt 36282501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 20610093 - 20610006
Alignment:
Q  91 aagttggttaattggctattgggttgggccatatataaagaaagtatcgattaagtacgggcgagtgcccagggtaggcgggtggtgg 178  Q
    |||| ||||||| |||||||||| ||  | | |||||||||||||||||||||||  ||||||||||||| |||| | ||||||||||    
T  20610093 aagtgggttaatgggctattgggctgaacaaaatataaagaaagtatcgattaagctcgggcgagtgcccggggtcgtcgggtggtgg 20610006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 37382976 - 37383027
Alignment:
Q  91 aagttggttaattggctattgggttgggccatatataaagaaagtatcgatt 142  Q
    |||| ||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  37382976 aagtgggttaatgggctattgggttggaccatatatacagaaagtatcgatt 37383027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 43135258 - 43135207
Alignment:
Q  91 aagttggttaattggctattgggttgggccatatataaagaaagtatcgatt 142  Q
    |||| ||||||| | ||||||  |||||||||||||||||||||||||||||    
T  43135258 aagtgggttaatggactattgcattgggccatatataaagaaagtatcgatt 43135207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 17036265 - 17036199
Alignment:
Q  91 aagttggttaattggctattgggttgggccatatataaagaaagtatcgattaagtacgggcgagtg 157  Q
    |||| ||||||| |||||||||||||| | | |||||||||||| ||||||| ||  ||||||||||    
T  17036265 aagtgggttaataggctattgggttggccgaaatataaagaaagaatcgattgagcccgggcgagtg 17036199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 19952478 - 19952529
Alignment:
Q  26 agaagaacgtgtttctgctgtgcgcgtgtgaaaatttttagaatttgcctaa 77  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||||||    
T  19952478 agaagaacgtgtttctgttgtgcgcgtgtgagaaattttagaatttgcctaa 19952529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 19952543 - 19952629
Alignment:
Q  96 ggttaattggctattgggttgggccatatataaagaaagtatcgattaagtacgggcgagtgcccagggtaggcgggtggtggaacc 182  Q
    ||||||| |||||||| | |||| |||||||||||||| |||||||| ||| | |||||||| |  |||| | ||||||||| ||||    
T  19952543 ggttaatgggctattgaggtgggtcatatataaagaaaatatcgattgagtccaggcgagtgtctggggtcgccgggtggtgaaacc 19952629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 4231756 - 4231809
Alignment:
Q  106 ctattgggttgggccatatataaagaaagtatcgattaagtacgggcgagtgcc 159  Q
    ||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||    
T  4231756 ctatttggttgggccaaatataaagaaagtatcgattgagttcgggcgagtgcc 4231809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 1279829 - 1279773
Alignment:
Q  96 ggttaattggctattgggttgggccatatataaagaaagtatcgattaagtacgggc 152  Q
    ||||||| |||||||| |||||| ||||||||||||||||||||||| ||| |||||    
T  1279829 ggttaatgggctattgagttgggtcatatataaagaaagtatcgattgagtccgggc 1279773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 42615062 - 42615130
Alignment:
Q  106 ctattgggttgggccatatataaagaaagtatcgattaagtacgggcgagtgcccagggtaggcgggtg 174  Q
    |||||||||||  ||| |||||||||||||||||||| ||| ||| |||||| || |||| | ||||||    
T  42615062 ctattgggttgaaccaaatataaagaaagtatcgattgagtccggacgagtgtccggggtcgccgggtg 42615130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University