View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_69 (Length: 407)
Name: NF9264_low_69
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 39392064 - 39392444
Alignment:
| Q |
17 |
aggaggctacgacccgatgcacctatcacgctaatgaaaagaatgcctaagataaaaaggtttgttgtcgtagccatattgatggtgatatttattaatt |
116 |
Q |
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| T |
39392064 |
aggaggctacgacccgatgcacctatcacgctaatgaaaagaatgcctaagataaaaaagtttgttgtcgtagccatattggtggtgatatttattaatt |
39392163 |
T |
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| Q |
117 |
cccagcttgaaaccttgattaaacaaaatgtttaagattttaaaatgcagnnnnnnnnnatgatgttgtggttgctcatatggcaacctataactgcaat |
216 |
Q |
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| T |
39392164 |
cccagcttgaaaccttgattaaacaaaatgtttaagattttaaaatgcagtttttttt-atgatgttgtggttgctcatatggcaacctataactgcaat |
39392262 |
T |
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| Q |
217 |
ttagaaacccttcaccaatttggatgactcaattacatgtgacttgaagaatgatatttatacaagagaattatagatcatactctccctatgaagtcta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39392263 |
ttagaaacccttcaccaatttggatgactcaattacatgtgacttgaagaatggtatttatacaagagaattatagatcatactctccctatgaagtcta |
39392362 |
T |
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| Q |
317 |
tttttggtcatcattttcctattaattaatctggatattaatggaagttttttgattttagattgtctaaatttagtattat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39392363 |
tttttggtcatcattttcctattaattaatctggatattaatggaagttttttgattttagattgtctaaatttagtattat |
39392444 |
T |
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