View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264_low_7 (Length: 918)

Name: NF9264_low_7
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264_low_7
NF9264_low_7
[»] chr4 (33 HSPs)
chr4 (13-414)||(23992319-23992716)
chr4 (98-212)||(55032754-55032869)
chr4 (301-415)||(19591009-19591124)
chr4 (315-414)||(26870028-26870127)
chr4 (301-386)||(28120212-28120297)
chr4 (294-366)||(49711671-49711743)
chr4 (296-413)||(1975318-1975435)
chr4 (294-414)||(43332532-43332653)
chr4 (294-415)||(10259321-10259444)
chr4 (315-414)||(15650485-15650582)
chr4 (294-413)||(24077393-24077513)
chr4 (294-413)||(51452599-51452719)
chr4 (315-413)||(3839095-3839193)
chr4 (294-415)||(21565011-21565133)
chr4 (294-415)||(26924261-26924383)
chr4 (332-415)||(35828680-35828763)
chr4 (301-413)||(56541695-56541807)
chr4 (229-298)||(56540100-56540169)
chr4 (322-413)||(5482984-5483075)
chr4 (372-415)||(17700121-17700164)
chr4 (372-414)||(37700900-37700942)
chr4 (358-415)||(41983530-41983587)
chr4 (358-414)||(5759328-5759384)
chr4 (332-415)||(29706148-29706232)
chr4 (345-413)||(43014591-43014659)
chr4 (22-54)||(55032722-55032754)
chr4 (372-415)||(2777222-2777265)
chr4 (350-413)||(16895928-16895991)
chr4 (372-414)||(5271601-5271643)
chr4 (372-414)||(21353964-21354006)
chr4 (372-413)||(14828803-14828844)
chr4 (374-415)||(15521071-15521112)
chr4 (358-415)||(35707656-35707713)
[»] chr2 (24 HSPs)
chr2 (19-381)||(7768714-7769089)
chr2 (315-414)||(17026060-17026158)
chr2 (294-381)||(24278975-24279062)
chr2 (315-414)||(17092245-17092341)
chr2 (294-413)||(11866217-11866337)
chr2 (316-413)||(25124044-25124141)
chr2 (294-413)||(3711079-3711199)
chr2 (302-415)||(1691425-1691539)
chr2 (296-415)||(7983985-7984103)
chr2 (294-413)||(35357610-35357730)
chr2 (372-413)||(19126000-19126041)
chr2 (229-298)||(25124813-25124882)
chr2 (294-414)||(32725990-32726109)
chr2 (315-391)||(10820995-10821070)
chr2 (372-416)||(26828460-26828504)
chr2 (320-391)||(16884196-16884267)
chr2 (320-391)||(17041886-17041957)
chr2 (332-414)||(22374080-22374163)
chr2 (344-415)||(30922096-30922167)
chr2 (372-415)||(33908192-33908235)
chr2 (322-413)||(45003662-45003753)
chr2 (372-414)||(5253295-5253337)
chr2 (362-416)||(7364770-7364824)
chr2 (372-413)||(11707574-11707615)
[»] chr5 (26 HSPs)
chr5 (19-364)||(39169396-39169762)
chr5 (315-414)||(9702652-9702751)
chr5 (294-414)||(18037229-18037350)
chr5 (296-411)||(19365869-19365984)
chr5 (302-416)||(32977099-32977213)
chr5 (294-414)||(2366839-2366959)
chr5 (315-414)||(9809820-9809918)
chr5 (315-413)||(12702061-12702158)
chr5 (315-414)||(7863528-7863624)
chr5 (315-366)||(290873-290924)
chr5 (296-414)||(38041490-38041609)
chr5 (315-391)||(12763099-12763174)
chr5 (335-413)||(42819330-42819409)
chr5 (294-348)||(37464501-37464555)
chr5 (376-414)||(35539209-35539247)
chr5 (372-413)||(20995179-20995220)
chr5 (345-414)||(22602634-22602703)
chr5 (372-416)||(4883071-4883115)
chr5 (335-414)||(8350212-8350292)
chr5 (372-416)||(20350825-20350869)
chr5 (377-415)||(3149900-3149939)
chr5 (361-416)||(38935337-38935392)
chr5 (372-414)||(17997460-17997502)
chr5 (361-415)||(36366123-36366177)
chr5 (347-416)||(13596894-13596963)
chr5 (372-413)||(19395654-19395695)
[»] scaffold0088 (1 HSPs)
scaffold0088 (315-415)||(52691-52791)
[»] chr8 (24 HSPs)
chr8 (315-415)||(12249910-12250010)
chr8 (315-415)||(23626054-23626154)
chr8 (315-415)||(39445197-39445297)
chr8 (302-414)||(27272616-27272728)
chr8 (294-415)||(44213034-44213155)
chr8 (316-415)||(41907954-41908053)
chr8 (315-414)||(2961008-2961105)
chr8 (294-415)||(20662916-20663038)
chr8 (301-414)||(12660957-12661070)
chr8 (294-413)||(30548281-30548401)
chr8 (314-367)||(4634833-4634886)
chr8 (315-415)||(39204807-39204908)
chr8 (372-415)||(32847197-32847240)
chr8 (317-391)||(21543180-21543253)
chr8 (322-415)||(2680234-2680327)
chr8 (334-415)||(32569575-32569656)
chr8 (315-413)||(29434217-29434314)
chr8 (372-414)||(4464352-4464395)
chr8 (372-415)||(27273878-27273921)
chr8 (322-413)||(28940714-28940805)
chr8 (372-415)||(41531768-41531811)
chr8 (374-416)||(42060659-42060701)
chr8 (374-415)||(6300487-6300528)
chr8 (374-415)||(37029917-37029958)
[»] chr1 (18 HSPs)
chr1 (315-415)||(28565428-28565528)
chr1 (315-415)||(28631754-28631854)
chr1 (315-393)||(15317589-15317667)
chr1 (315-381)||(12714915-12714981)
chr1 (302-415)||(23909714-23909828)
chr1 (301-415)||(34265874-34265988)
chr1 (315-416)||(13662116-13662218)
chr1 (229-298)||(48183440-48183509)
chr1 (301-381)||(1954373-1954453)
chr1 (312-415)||(9112131-9112234)
chr1 (372-414)||(17672387-17672429)
chr1 (372-414)||(18815127-18815169)
chr1 (349-415)||(29693365-29693431)
chr1 (342-415)||(4893938-4894011)
chr1 (361-415)||(3929746-3929800)
chr1 (372-414)||(44407294-44407336)
chr1 (372-413)||(24294869-24294910)
chr1 (372-413)||(31620599-31620640)
[»] scaffold0051 (1 HSPs)
scaffold0051 (315-413)||(61656-61754)
[»] scaffold0103 (1 HSPs)
scaffold0103 (294-415)||(12945-13066)
[»] chr7 (30 HSPs)
chr7 (315-415)||(9226019-9226119)
chr7 (315-415)||(42996884-42996984)
chr7 (315-414)||(38434277-38434376)
chr7 (294-415)||(20765532-20765654)
chr7 (296-413)||(23476587-23476705)
chr7 (294-415)||(29491110-29491232)
chr7 (294-414)||(19033645-19033766)
chr7 (294-414)||(20720870-20720991)
chr7 (295-390)||(42298831-42298926)
chr7 (295-366)||(45121953-45122024)
chr7 (332-413)||(1483698-1483779)
chr7 (294-366)||(8998426-8998498)
chr7 (294-348)||(34282160-34282214)
chr7 (294-348)||(33230018-33230072)
chr7 (315-367)||(42244627-42244679)
chr7 (332-414)||(1484767-1484849)
chr7 (342-416)||(21669229-21669303)
chr7 (372-413)||(3795712-3795753)
chr7 (229-282)||(20266737-20266790)
chr7 (345-414)||(27840487-27840556)
chr7 (332-415)||(2067847-2067931)
chr7 (342-414)||(31896813-31896885)
chr7 (358-416)||(691275-691333)
chr7 (229-287)||(1483483-1483541)
chr7 (372-414)||(8925225-8925267)
chr7 (361-414)||(12960596-12960649)
chr7 (342-415)||(17817689-17817762)
chr7 (332-393)||(19124104-19124165)
chr7 (362-415)||(39278228-39278281)
chr7 (374-415)||(47573331-47573372)
[»] chr6 (18 HSPs)
chr6 (294-414)||(2624721-2624841)
chr6 (315-414)||(1932283-1932382)
chr6 (294-391)||(22975740-22975837)
chr6 (294-391)||(23812564-23812661)
chr6 (315-415)||(4425851-4425951)
chr6 (294-413)||(33979106-33979226)
chr6 (294-415)||(250045-250167)
chr6 (294-415)||(12579775-12579897)
chr6 (315-415)||(33318995-33319092)
chr6 (301-414)||(33300597-33300710)
chr6 (294-367)||(3052052-3052125)
chr6 (323-415)||(5753125-5753213)
chr6 (315-391)||(8615029-8615102)
chr6 (358-415)||(6966235-6966292)
chr6 (372-414)||(2522024-2522066)
chr6 (361-415)||(11207646-11207700)
chr6 (362-415)||(18389166-18389219)
chr6 (362-415)||(24447785-24447838)
[»] chr3 (19 HSPs)
chr3 (294-413)||(44186859-44186978)
chr3 (315-415)||(12157707-12157807)
chr3 (295-414)||(22759056-22759174)
chr3 (294-413)||(30766428-30766547)
chr3 (316-381)||(54792724-54792789)
chr3 (315-381)||(35437198-35437264)
chr3 (315-416)||(16496319-16496421)
chr3 (315-392)||(36164850-36164927)
chr3 (294-347)||(918819-918872)
chr3 (294-347)||(44072774-44072827)
chr3 (362-415)||(48519654-48519707)
chr3 (315-414)||(26035813-26035911)
chr3 (294-360)||(6093197-6093263)
chr3 (342-415)||(5240958-5241031)
chr3 (358-415)||(8396752-8396809)
chr3 (358-414)||(18688660-18688716)
chr3 (372-415)||(50742296-50742339)
chr3 (372-414)||(19406625-19406667)
chr3 (372-413)||(51249228-51249269)
[»] scaffold0440 (1 HSPs)
scaffold0440 (306-391)||(8336-8421)
[»] scaffold0499 (1 HSPs)
scaffold0499 (295-366)||(10693-10764)
[»] scaffold0376 (1 HSPs)
scaffold0376 (315-414)||(10783-10879)
[»] scaffold0249 (1 HSPs)
scaffold0249 (315-416)||(24916-25016)
[»] scaffold0073 (1 HSPs)
scaffold0073 (294-366)||(33435-33507)
[»] scaffold0004 (1 HSPs)
scaffold0004 (296-359)||(81010-81073)
[»] scaffold0006 (1 HSPs)
scaffold0006 (315-416)||(151878-151980)
[»] scaffold1891 (1 HSPs)
scaffold1891 (372-415)||(330-374)
[»] scaffold0759 (1 HSPs)
scaffold0759 (358-414)||(3423-3479)
[»] scaffold0069 (1 HSPs)
scaffold0069 (342-415)||(14618-14691)
[»] scaffold0171 (1 HSPs)
scaffold0171 (372-414)||(29638-29680)
[»] scaffold0122 (1 HSPs)
scaffold0122 (372-414)||(5400-5441)
[»] scaffold0047 (1 HSPs)
scaffold0047 (372-413)||(25614-25655)
[»] scaffold0005 (1 HSPs)
scaffold0005 (372-413)||(10865-10906)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 23992716 - 23992319
Alignment:
Q  13 agcagagacatgatgtactatgagattcctaattgactactttctcttcatcaaagatttagagctccatatgtttggtcctaaatatgaagcactgcat 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23992716 agcagggacatgatgtactatgagattcctaattgactactttctcttcatcaaagatttagagctccatatgtttggtcctaaatatgaagcactgcat 23992617  T
Q  113 tatgtaatagggatatgatacttaggttgtggcaataagtgataggagtttggaaattcacttttaaactcagtaatcaaggagggcacccacaaaattt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23992616 tatgtaatagggatatgatacttaggttgtggcaataagtgataggagtttggaaattcacttttaaactcagtaatcaaggagggcacccacaaaattt 23992517  T
Q  213 atgaatgttgctgtattttgacagtttatcgttttagtagcgactcagattcaaatactaataagttttagcaattaacaaattttggtaaatatttata 312  Q
     || |    || ||  |   | |||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||| |||||||||| |    
T  23992516 ctgca---agcagtgctcaca-agtttatcgttttagtagcgactcatgttcaaatactaataagttttagtaattaacaaattttgataaatatttaaa 23992421  T
Q  313 atgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    ||| |||||||||||||    
T  23992420 atgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaacgatacgttattcaacccgtgcgaaacacaggtttgtaactag 23992321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 55032754 - 55032869
Alignment:
Q  98 tatgaagcactgcattatgtaatagggatatgata-cttaggttgtggcaataagtgataggagtttggaaattcacttttaaactcagtaatcaaggag 196  Q
    |||||||||||| |||||||||||||||||  ||| |||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  55032754 tatgaagcactgtattatgtaatagggatacaataacttaagttgtcacaataagtgataggagtttggaaattcacttttaaactcagtaatcaaggat 55032853  T
Q  197 ggcacccacaaaattt 212  Q
    ||||||||||||||||    
T  55032854 ggcacccacaaaattt 55032869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 19591009 - 19591124
Alignment:
Q  301 taaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgctttgcacg 399  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| || |   ||||||| | ||||||||||| |||||||||   |||||    
T  19591009 taaatatttataatgtttgtgcaatattcattaatttgctcatttttcctttgaaatatttttttttacaagatacgttattaaacccgtgcgaagcacg 19591108  T
Q  400 ggtttgtaactagttt 415  Q
    ||||||||||||||||    
T  19591109 ggtttgtaactagttt 19591124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 26870127 - 26870028
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||| | |||| |||||| |||||||||   ||||||||||||||||||||    
T  26870127 gtttgtgcaatattcattaatttgctcatttttccttttgaacaaattttttacaagatatgttattcaacccgtgcaaagcacgggtttgtaactagtt 26870028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 301 - 386
Target Start/End: Complemental strand, 28120297 - 28120212
Alignment:
Q  301 taaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacc 386  Q
    |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||  | ||||||||||| ||||    
T  28120297 taaagatttataatgtttgtgcaatattcattaatttactcatttttcctttggaacaattttttttcaagatacgttattaaacc 28120212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 49711743 - 49711671
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttttt 366  Q
    |||||| ||||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  49711743 attttgataaatatttctaatgtttgtgcactattccttaatttgctcatttttcctttggaacaaatttttt 49711671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 296 - 413
Target Start/End: Original strand, 1975318 - 1975435
Alignment:
Q  296 tttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttg 395  Q
    |||| ||||||||| |||| ||||||||||||||  |||||||||||||||||||||| ||||| ||||||  | |||| || ||| |||||||||   |    
T  1975318 tttgataaatatttctaatatttgtgcaatattccttaatttgctcatttttcctttgaaacaatttttttgcaagatatgtaattcaacccgtgcgaag 1975417  T
Q  396 cacgggtttgtaactagt 413  Q
    || |||||||||||||||    
T  1975418 catgggtttgtaactagt 1975435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 294 - 414
Target Start/End: Original strand, 43332532 - 43332653
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  43332532 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 43332631  T
Q  393 ttgcacgggtttgtaactagtt 414  Q
      ||||||||||||||||||||    
T  43332632 acgcacgggtttgtaactagtt 43332653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 294 - 415
Target Start/End: Complemental strand, 10259444 - 10259321
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca--aattttttaaaggatacgttattgaacccgtgc 391  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |    ||||||| |  |||||||||| |||||||||    
T  10259444 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaagattttttttttataaaatacgttattaaacccgtgc 10259345  T
Q  392 tttgcacgggtttgtaactagttt 415  Q
       |||||||||||||||||||||    
T  10259344 aacgcacgggtttgtaactagttt 10259321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 15650582 - 15650485
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||| ||||||||| |||||||| |||||||  ||| |||||||||||||| | ||||||||||| |||||||||   ||||||||||||||||||||    
T  15650582 gtttgttcaatattcattaatttgcacattttt--ttttgaacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 15650485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 24077513 - 24077393
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || | | ||||||| |  |||||||||| |||| ||||     
T  24077513 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaagatatttttttataaaatacgttattaaacctgtgca 24077414  T
Q  393 ttgcacgggtttgtaactagt 413  Q
      |||||||||||||||||||    
T  24077413 acgcacgggtttgtaactagt 24077393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 294 - 413
Target Start/End: Original strand, 51452599 - 51452719
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  51452599 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 51452698  T
Q  393 ttgcacgggtttgtaactagt 413  Q
      |||||||||||||||||||    
T  51452699 acgcacgggtttgtaactagt 51452719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 3839193 - 3839095
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||||||| | ||||||| |||||||| ||| ||||||| ||||||| | ||||||||||| ||||| |||   |||||||||||||||||||    
T  3839193 gtttgtgcaatatttattaatttgttcattttttcttaggaacaatttttttacaagatacgttattcaacccttgcgaagcacgggtttgtaactagt 3839095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 415
Target Start/End: Original strand, 21565011 - 21565133
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  21565011 attttgataaagatttataatgtttatgcaatattcattaatttgctcatttttcttttaaaagatttttttttataaaatacgttattaaacccgtgca 21565110  T
Q  393 ttgcacgggtttgtaactagttt 415  Q
      |||||||||||||||||||||    
T  21565111 acgcacgggtttgtaactagttt 21565133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 415
Target Start/End: Complemental strand, 26924383 - 26924261
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaa-caaattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  ||     ||||||| |  |||||||||| |||||||||     
T  26924383 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatttttttttttataaaatacgttattaaacccgtgca 26924284  T
Q  393 ttgcacgggtttgtaactagttt 415  Q
      |||||||||||||||||||||    
T  26924283 acgcacgggtttgtaactagttt 26924261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 35828763 - 35828680
Alignment:
Q  332 taatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||| | ||||||||||| |||||| |||||||||  |||||||||| ||||||||||| |||| ||||||||| ||||||    
T  35828763 taatttgattatttttcctttagaacaatttttttaaaaaatacgttatttaacccgtgcttcgcacaggtttgtaagtagttt 35828680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 301 - 413
Target Start/End: Original strand, 56541695 - 56541807
Alignment:
Q  301 taaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgg 400  Q
    ||||||||| ||||||||||||||  ||   ||||||||| |||||||||||| || || |||||||   ||||||||||| |||||||||   |||| |    
T  56541695 taaatatttctaatgtttgtgcaacttttcttaatttgcttatttttcctttgaaataatttttttacgagatacgttattcaacccgtgcgaagcacag 56541794  T
Q  401 gtttgtaactagt 413  Q
    |||||||||||||    
T  56541795 gtttgtaactagt 56541807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 56540100 - 56540169
Alignment:
Q  229 tttgacagtttatcgttttagtagcgactcagattcaaatactaataagttttagcaattaacaaatttt 298  Q
    |||||||||||||| ||||||||| || |||  |||||||| ||||||||||||||| | ||||||||||    
T  56540100 tttgacagtttatcattttagtagtgattcaagttcaaataataataagttttagcagtaaacaaatttt 56540169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 322 - 413
Target Start/End: Original strand, 5482984 - 5483075
Alignment:
Q  322 caatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||| ||||||||  ||| |||||||| || ||||||||| |||  |||||| ||| |||||||||   |||||||||||||||||||    
T  5482984 caatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagt 5483075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 17700121 - 17700164
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  17700121 atacgttattgaacccgtgcttggcatgggtttgtaactagttt 17700164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 37700942 - 37700900
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  37700942 atacgttattgaacccgtgcttcgcacggatttgtaactagtt 37700900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 41983587 - 41983530
Alignment:
Q  358 aaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||  | ||||||||||||||||||||   |||||||||||||||||||||    
T  41983587 aaattttttatcgaatacgttattgaacccgtgcgaagcacgggtttgtaactagttt 41983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 5759328 - 5759384
Alignment:
Q  358 aaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||  |||||||||| |||||||||   ||||||||||||||||||||    
T  5759328 aaattttttaaataatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 5759384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 29706232 - 29706148
Alignment:
Q  332 taatttgctcatttttcctttggaacaaattttttaa-aggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||| ||| |||||| |||||| | | ||||||||||| || ||||||   |||||||||| ||||||||||    
T  29706232 taatttgctcatttttcttttagaacaattttttttacaagatacgttattcaatccgtgcgaagcacgggtttataactagttt 29706148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 43014659 - 43014591
Alignment:
Q  345 tttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||| ||||||| || ||||||| | ||||||||||| |||||||||   |||||||||||||||||||    
T  43014659 tttcttttggaataatttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagt 43014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 55032722 - 55032754
Alignment:
Q  22 atgatgtactatgagattcctaattgactactt 54  Q
    |||||||||||||||||||||||||||||||||    
T  55032722 atgatgtactatgagattcctaattgactactt 55032754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 2777222 - 2777265
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  2777222 atacgttattgaacccgtgcgaagcacgggtttgtaactagttt 2777265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 16895928 - 16895991
Alignment:
Q  350 tttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||| ||||||| | ||||||||||| |||||||||   ||| |||||||||||||||    
T  16895928 tttggaacaatttttttacaagatacgttattcaacccgtgcgaagcatgggtttgtaactagt 16895991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 5271643 - 5271601
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  5271643 atacgttattgaacccgtgcgaagcacgggtttgtaactagtt 5271601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 21353964 - 21354006
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  21353964 atacgttattgaacccgtgcgaagcacgggtttgtaactagtt 21354006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 14828844 - 14828803
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  14828844 atacgttattgaacccgtgcgaagcacgggtttgtaactagt 14828803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 15521071 - 15521112
Alignment:
Q  374 acgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||   |||||||||||||||||||||    
T  15521071 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 15521112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 35707713 - 35707656
Alignment:
Q  358 aaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||||||| |||  |||||||||| |||||||||   |||||||||||||||||||||    
T  35707713 aaatttttaaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 35707656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 7769089 - 7768714
Alignment:
Q  19 gacatgatgtactatgagattcctaattgactactttctcttcatcaaagatttagagctccatatgtttggtcctaaatatgaagcactgcattatgta 118  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7769089 gacatgatgtactatgagatttctaattgactactttctcttcatcaaagatttagagcttcatatgtttggtcctaaatatgaagcactgcattatgta 7768990  T
Q  119 atagggatatgatacttaggttgtggcaataagtgataggagtttggaaattcacttttaaactcagtaatcaaggagggcacccacaaaatttatg--- 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||       
T  7768989 atagggatatgatacttaggttgtggcaataagtgataggagtttggaaattcacttttaaactcagtaatcaaagaggacacccacaaaatttctgcaa 7768890  T
Q  216 -----------aatgttgctgtattttgacagtttatcgttttagtagcgactcagattcaaatactaataagttttagcaattaacaaattttggtaaa 304  Q
               ||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  7768889 gcggtgctgacaatgttgttgtattttgatagtttatcgttttagtaacgactcaggttcaaatactaataagttttagcaattaacaaattttgataaa 7768790  T
Q  305 tatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttatt 381  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||||| || || |||||||||  ||||||||||    
T  7768789 tatttataatgtttgtgcaatatttaataatttgctca-ttttcctttgaaataatttttttaaaaaatacgttatt 7768714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 315 - 414
Target Start/End: Original strand, 17026060 - 17026158
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| ||||||||| |||| ||||||| ||||||||||||| | |||| |||||| ||||||||| | ||||||||||||||||||||    
T  17026060 gtttgtgcaatattcattaatttgctnatttctcctttgnaacaaattttttacaagatatgttattcaacccgtgc-tcgcacgggtttgtaactagtt 17026158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 24278975 - 24279062
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttatt 381  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| | ||||| |||||    
T  24278975 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttccttcggaacaatttttttacaagatacattatt 24279062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 315 - 414
Target Start/End: Original strand, 17092245 - 17092341
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| ||| |||||||||| ||||||||||||||||||||| | |||| |||||| |||||||||   |  |||||||||||||||||    
T  17092245 gtttgtgcaatattcattaaattgctcatttctcctttggaacaaattttttacaagatatgttattcaacccgtgc---gagcgggtttgtaactagtt 17092341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 11866337 - 11866217
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  11866337 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 11866238  T
Q  393 ttgcacgggtttgtaactagt 413  Q
      |||||||||||||||||||    
T  11866237 acgcacgggtttgtaactagt 11866217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 25124141 - 25124044
Alignment:
Q  316 tttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    ||||||||||||||  |||||| ||||||||||||||| ||||| ||||||| | |||| || ||| |||||||||   |||||||||||||||||||    
T  25124141 tttgtgcaatattccttaatttactcatttttcctttgaaacaatttttttacaagatatgtaattcaacccgtgcgaagcacgggtttgtaactagt 25124044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 294 - 413
Target Start/End: Original strand, 3711079 - 3711199
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| || ||||||     
T  3711079 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaatccgtgca 3711178  T
Q  393 ttgcacgggtttgtaactagt 413  Q
      |||||||||||||||||||    
T  3711179 acgcacgggtttgtaactagt 3711199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 302 - 415
Target Start/End: Complemental strand, 1691539 - 1691425
Alignment:
Q  302 aaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaa-attttttaaaggatacgttattgaacccgtgctttgcacgg 400  Q
    |||||||| |||||||||||||||||||  |||||||||||||||| ||||| || ||  ||||||| |  ||| ||| || |||||||||   ||||||    
T  1691539 aaatatttctaatgtttgtgcaatattccttaatttgctcattttttctttgaaataattttttttacaaaatatgttcttcaacccgtgcgaagcacgg 1691440  T
Q  401 gtttgtaactagttt 415  Q
    |||||||||||||||    
T  1691439 gtttgtaactagttt 1691425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 415
Target Start/End: Complemental strand, 7984103 - 7983985
Alignment:
Q  296 tttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgcttt 394  Q
    |||| ||||||||| ||||||||||||||| |||  |||||||||||||||||||||| || |   ||||||| |  |||||||||| |||||||  ||     
T  7984103 tttgataaatatttctaatgtttgtgcaatgttccttaatttgctcatttttcctttgaaatatttttttttacaatatacgttattcaacccgt--ttc 7984006  T
Q  395 gcacgggtttgtaactagttt 415  Q
    |||||||||||||||| ||||    
T  7984005 gcacgggtttgtaactggttt 7983985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 35357730 - 35357610
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||| ||||||||| ||||||||||||||||  |||  || |   ||||||| |  |||||||||| |||||||||     
T  35357730 attttgataaagatttataatgtttgtacaatattcattaatttgctcattttttttttaaaagatttttttttataaaatacgttattaaacccgtgca 35357631  T
Q  393 ttgcacgggtttgtaactagt 413  Q
      |||||||||||||||||||    
T  35357630 acgcacgggtttgtaactagt 35357610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 19126041 - 19126000
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  19126041 atacgttattgaacccgtgcttcgcacgggtttgtaactagt 19126000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 25124882 - 25124813
Alignment:
Q  229 tttgacagtttatcgttttagtagcgactcagattcaaatactaataagttttagcaattaacaaatttt 298  Q
    ||||||| |||||||||||| ||||||||||  |||||||| ||||||||||||||| | ||||| ||||    
T  25124882 tttgacaatttatcgttttaatagcgactcaagttcaaataataataagttttagcagtaaacaattttt 25124813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 32726109 - 32725990
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctt 393  Q
    ||||||||||| |||| |||||||| |||||||| || |||||||| |  ||||| |||| || ||  |||||| | ||||||||||||||||| |||      
T  32726109 attttggtaaaaatttctaatgtttatgcaatatccattaatttgc-ctattttcgtttgtaataatatttttacaagatacgttattgaacccatgcga 32726011  T
Q  394 tgcacgggtttgtaactagtt 414  Q
     |||||||||| |||||||||    
T  32726010 agcacgggtttataactagtt 32725990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 315 - 391
Target Start/End: Complemental strand, 10821070 - 10820995
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgc 391  Q
    |||||| ||||||||| |||||||||| |||||  |||| ||||||||||||| | | ||||||||| |||||||||    
T  10821070 gtttgttcaatattcattaatttgctctttttttttttg-aacaaattttttataagttacgttattcaacccgtgc 10820995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 26828460 - 26828504
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtttg 416  Q
    ||||||||||||||||||||   ||||||||||||||||||||||    
T  26828460 atacgttattgaacccgtgcgaagcacgggtttgtaactagtttg 26828504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 16884196 - 16884267
Alignment:
Q  320 tgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgc 391  Q
    ||||| ||||| |||||  ||||||||| ||||||||||| ||||||| |  |||||||||| |||||||||    
T  16884196 tgcaacattcattaattaactcattttttctttggaacaatttttttacaaaatacgttattcaacccgtgc 16884267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 17041886 - 17041957
Alignment:
Q  320 tgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgc 391  Q
    ||||| ||||| |||||  ||||||||| ||||||||||| ||||||| |  |||||||||| |||||||||    
T  17041886 tgcaacattcattaattaactcattttttctttggaacaatttttttacaaaatacgttattcaacccgtgc 17041957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 22374163 - 22374080
Alignment:
Q  332 taatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgct-ttgcacgggtttgtaactagtt 414  Q
    ||||||| ||||||||||||| | |||| | ||||| | ||||||||||| ||||||||||   |||||||||||||| |||||    
T  22374163 taatttgttcatttttccttttgtacaattgttttacaagatacgttattcaacccgtgctgaagcacgggtttgtaagtagtt 22374080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 344 - 415
Target Start/End: Complemental strand, 30922167 - 30922096
Alignment:
Q  344 ttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||| |||| |||||||||||||| | ||||||| ||| ||||||||    |||||||||||||||||||||    
T  30922167 tttttctttagaacaaattttttacaagatacgtaattcaacccgtgtgaagcacgggtttgtaactagttt 30922096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 33908192 - 33908235
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  33908192 atacgttattgaacccgtgcgaagcacgggtttgtaactagttt 33908235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 45003753 - 45003662
Alignment:
Q  322 caatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||| ||||||||  ||| |||||||| || ||||||||  |||  |||||| ||| |||||||||   |||||||||||||||||||    
T  45003753 caatattccgtaatttgaacatctttcctttagagcaaattttaaaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagt 45003662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 5253295 - 5253337
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  5253295 atacgttattgaacccgtgcgaagcacgggtttgtaactagtt 5253337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 7364770 - 7364824
Alignment:
Q  362 tttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtttg 416  Q
    |||||| | ||||||||||| |||||||||   ||||||||||||||||||||||    
T  7364770 tttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtttg 7364824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 11707574 - 11707615
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  11707574 atacgttattgaacccgtgcgaagcacgggtttgtaactagt 11707615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 39169762 - 39169396
Alignment:
Q  19 gacatgatgtactatgagattcctaattgactactttctcttcatcaaagatttagagctccatatgtttggtcctaaatatgaagcactgcattatgta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39169762 gacatgatgtactatgagattcctaattgactactttctcttcatcaaagatttagagcttcatatgtttggtcctaaatatgaagcactgcattatgta 39169663  T
Q  119 a---------tagggatatgatacttaggttgtggcaataagtgataggagtttggaaattcacttttaaactcagtaatcaaggagggcacccacaaaa 209  Q
    |         ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||      
T  39169662 aatcatgtaatagggatataatacttaggttgtcgcaataagtgataggagtttggaaattcacttttaaactcagtaatcaaggacgacacccacaa-- 39169565  T
Q  210 tttatg--------------aatgttgctgtattttgacagtttatcgttttagtagcgactcagattcaaatactaataagttttagcaattaacaaat 295  Q
    ||| ||              ||||||| |||| ||||||| ||||| | ||||| |||||||||| |||||||||||||||||||||||||| |||||||    
T  39169564 tttctgcaagcagtactgacaatgttgatgtaatttgacaatttattgctttagcagcgactcagtttcaaatactaataagttttagcaataaacaaat 39169465  T
Q  296 tttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttt 364  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  39169464 tttgataaatatttataatgtttgtgcaatattcagtaattttctcatttttccttcggaacaaatttt 39169396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 315 - 414
Target Start/End: Original strand, 9702652 - 9702751
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||   ||||||||||||||||||||    
T  9702652 gtttgtgcaatattcattaatttgctcatttttcctttggaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 9702751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 18037350 - 18037229
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttat-tgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||   |||||| ||||||| | |||||||||| | |||||||||     
T  18037350 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcctcaagaacaatttttttacatgatacgttatctcaacccgtgcg 18037251  T
Q  393 ttgcacgggtttgtaactagtt 414  Q
      ||||| ||||||||||||||    
T  18037250 aagcacgagtttgtaactagtt 18037229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 296 - 411
Target Start/End: Original strand, 19365869 - 19365984
Alignment:
Q  296 tttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttg 395  Q
    |||| |||||||||||||||||||||||||||||  |||||||||||||||| ||||  ||||  ||||||| | ||||||||||| ||||| |||   |    
T  19365869 tttgataaatatttataatgtttgtgcaatattccttaatttgctcattttttctttaaaacattttttttacaagatacgttattcaacccatgcgaag 19365968  T
Q  396 cacgggtttgtaacta 411  Q
    ||||||||||||||||    
T  19365969 cacgggtttgtaacta 19365984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 302 - 416
Target Start/End: Complemental strand, 32977213 - 32977099
Alignment:
Q  302 aaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacggg 401  Q
    |||||||| ||||||||||||||||||   |||||| ||||||||| ||||| ||||| ||||||| | ||||||||||| |||||||||   |||| ||    
T  32977213 aaatatttctaatgtttgtgcaatatttcttaatttactcattttttctttgaaacaatttttttacaagatacgttattcaacccgtgcgaagcaccgg 32977114  T
Q  402 tttgtaactagtttg 416  Q
    |||||||||||||||    
T  32977113 tttgtaactagtttg 32977099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 2366959 - 2366839
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctt 393  Q
    |||||| ||||| ||| |||| ||||||||||||||  ||||||||||||||||||||| ||| || ||||||| | ||||||||||| |||||||||      
T  2366959 attttgataaatctttctaatatttgtgcaatattccttaatttgctcatttttcctttagaataatttttttacaagatacgttattcaacccgtgcga 2366860  T
Q  394 tgcacgggtttgtaactagtt 414  Q
      ||| |||||||||||||||    
T  2366859 aacacaggtttgtaactagtt 2366839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 9809918 - 9809820
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||| |||||||  |||| ||||||||||||| | ||||| ||||| |||||||||   ||||||||||||||||||||    
T  9809918 gtttgtgcaatattcattaatttgcacattttttttttg-aacaaattttttacaagatacattattcaacccgtgcgaagcacgggtttgtaactagtt 9809820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 12702158 - 12702061
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||||||||| |||||||| |||||||  |||| ||||||||||||| | ||||| ||||| |||||||||   |||||||||||||||||||    
T  12702158 gtttgtgcaatattcattaatttgcacattttttttttg-aacaaattttttacaagatacattattcaacccgtgcgaagcacgggtttgtaactagt 12702061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 7863624 - 7863528
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||| | |||||   || |||||||||||||| | ||||||||||| |||||||||   ||||||||||||||||||||    
T  7863624 gtttgtgcaatattcattaatttgcactttttt---tttgaacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 7863528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 290873 - 290924
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttttt 366  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  290873 gtttgtgcaatattcattaatttgctcatttttcctttggaacaattttttt 290924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 414
Target Start/End: Complemental strand, 38041609 - 38041490
Alignment:
Q  296 tttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaa-attttttaaaggatacgttattgaacccgtgcttt 394  Q
    |||| ||||||||| |||| ||||||||||||||  |||||||||||||||| ||||| |||||  ||||||| |  ||| ||| || |||||||||       
T  38041609 tttgataaatatttctaatatttgtgcaatattccttaatttgctcattttttctttgaaacaactttttttacaaaatatgttcttcaacccgtgcgaa 38041510  T
Q  395 gcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||    
T  38041509 gcacgggtttgtaactagtt 38041490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 315 - 391
Target Start/End: Complemental strand, 12763174 - 12763099
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgc 391  Q
    |||||||||||||||| |||||||| |||||||  |||| ||||||||||||| | ||||||||||| |||||||||    
T  12763174 gtttgtgcaatattcattaatttgcacattttttttttg-aacaaattttttacaagatacgttattcaacccgtgc 12763099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 42819409 - 42819330
Alignment:
Q  335 tttgctcatttttcctttggaacaaattttttaa-aggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||| |||||||||||||||||| |||||| | | ||||||||||| |||||||||   |||||||||||||||||||    
T  42819409 tttgcttatttttcctttggaacaattttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagt 42819330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 37464501 - 37464555
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttc 348  Q
    |||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  37464501 attttgataaagatttataatttttgtgcaatattcattaatttgctcatttttc 37464555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 414
Target Start/End: Complemental strand, 35539247 - 35539209
Alignment:
Q  376 gttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  35539247 gttattgaacccgtgcttcgcacgggtttgtaactagtt 35539209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 20995220 - 20995179
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  20995220 atacgttattgaactcgtgcttcgcacgggtttgtaactagt 20995179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 22602703 - 22602634
Alignment:
Q  345 tttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||| ||||||| || ||||||| | ||||||||||| |||||||||   ||||||||||||||||||||    
T  22602703 tttcttttggaataatttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 22602634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 4883071 - 4883115
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtttg 416  Q
    ||||||||||||||||||||   ||||||||||||||||||||||    
T  4883071 atacgttattgaacccgtgcgaagcacgggtttgtaactagtttg 4883115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 8350212 - 8350292
Alignment:
Q  335 tttgctcatttttcctttggaacaa-attttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||| ||||||||||||||||||  ||||||| | ||||||||||| ||||||| |   |||||||||| |||||||||    
T  8350212 tttgcttatttttcctttggaacaattttttttacaagatacgttattcaacccgtacgaagcacgggtttataactagtt 8350292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 20350825 - 20350869
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtttg 416  Q
    ||||||||||||||||||||   ||||||||||||||||||||||    
T  20350825 atacgttattgaacccgtgcgaagcacgggtttgtaactagtttg 20350869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 415
Target Start/End: Complemental strand, 3149939 - 3149900
Alignment:
Q  377 ttattgaacccgtgcttt-gcacgggtttgtaactagttt 415  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  3149939 ttattgaacccgtgctttcgcacgggtttgtaactagttt 3149900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 38935337 - 38935392
Alignment:
Q  361 ttttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtttg 416  Q
    ||||||| || |||||||||||||||||| |   ||||||||||||||||||||||    
T  38935337 ttttttatagaatacgttattgaacccgtacgaagcacgggtttgtaactagtttg 38935392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 17997460 - 17997502
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  17997460 atacgttattgaacccgtgcgaagcacgggtttgtaactagtt 17997502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 36366177 - 36366123
Alignment:
Q  361 ttttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||| | ||||||||||| |||||||||   |||||||||||||||||||||    
T  36366177 ttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 36366123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 416
Target Start/End: Original strand, 13596894 - 13596963
Alignment:
Q  347 tcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtttg 416  Q
    |||||| || ||| |||||||||  |||||| ||| |||||||||   ||||||||||||||||||||||    
T  13596894 tcctttagagcaatttttttaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagtttg 13596963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 19395654 - 19395695
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  19395654 atacgttattgaacccgtgcgaagcacgggtttgtaactagt 19395695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 52791 - 52691
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||   ||||||||||||||||||||    
T  52791 gtttgtgcaatattcattaatttgctcatttttcctttggaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 52692  T
Q  415 t 415  Q
    |    
T  52691 t 52691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 12250010 - 12249910
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||   ||||||||||||||||||||    
T  12250010 gtttgtgcaatattcattaatttgctcatttttcctttggaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 12249911  T
Q  415 t 415  Q
    |    
T  12249910 t 12249910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 23626154 - 23626054
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||   ||||||||||||||||||||    
T  23626154 gtttgtgcaatattcattaatttgctcatttttcctttggaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 23626055  T
Q  415 t 415  Q
    |    
T  23626054 t 23626054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 39445197 - 39445297
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||   ||||||||||||||||||||    
T  39445197 gtttgtgcaatattcattaatttgctcatttttcctttggaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 39445296  T
Q  415 t 415  Q
    |    
T  39445297 t 39445297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 302 - 414
Target Start/End: Original strand, 27272616 - 27272728
Alignment:
Q  302 aaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacggg 401  Q
    |||||||| |||||||||||||||||||  ||||||||||||||||| ||| |||||||||| ||| | ||||||||||| |||||||||   |||||||    
T  27272616 aaatatttctaatgtttgtgcaatattctttaatttgctcatttttcgtttagaacaaatttattacaagatacgttattcaacccgtgcgaagcacggg 27272715  T
Q  402 tttgtaactagtt 414  Q
    |||||||||||||    
T  27272716 tttgtaactagtt 27272728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 294 - 415
Target Start/End: Complemental strand, 44213155 - 44213034
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctt 393  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |  ||||||| |  |||||||||| |||||||||      
T  44213155 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatattttttttataaaatacgttattaaacccgtgcaa 44213056  T
Q  394 tgcacgggtttgtaactagttt 415  Q
     |||||||||||||||||||||    
T  44213055 cgcacgggtttgtaactagttt 44213034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 316 - 415
Target Start/End: Original strand, 41907954 - 41908053
Alignment:
Q  316 tttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||| |||||||||||||||| |||| |||||||||||||| | ||||  ||||| |||||||||   |||||||||||||||||||||    
T  41907954 tttgtgcaatattcattaatttgctcattttttctttagaacaaattttttataagatatattattcaacccgtgcgaagcacgggtttgtaactagttt 41908053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 2961105 - 2961008
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||| ||||||||| |||||||| |||||||  ||| |||||||||||||| | ||||||||||| |||||||||   ||||||||||||||||||||    
T  2961105 gtttgttcaatattcattaatttgcacattttt--ttttgaacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 2961008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 294 - 415
Target Start/End: Complemental strand, 20663038 - 20662916
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  | |||||||| |||||||||     
T  20663038 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaacacgttattaaacccgtgca 20662939  T
Q  393 ttgcacgggtttgtaactagttt 415  Q
      |||||||||||||||||||||    
T  20662938 acgcacgggtttgtaactagttt 20662916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 301 - 414
Target Start/End: Complemental strand, 12661070 - 12660957
Alignment:
Q  301 taaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgg 400  Q
    ||||||||| |||||||||||||||||||| ||||||||| |||||    ||| || || ||||||| | ||||||||||| ||||| |||   ||||||    
T  12661070 taaatatttctaatgtttgtgcaatattcattaatttgcttattttcatcttgaaataatttttttacaagatacgttatttaacccatgcgaagcacgg 12660971  T
Q  401 gtttgtaactagtt 414  Q
    ||||||||||||||    
T  12660970 gtttgtaactagtt 12660957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 30548401 - 30548281
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  30548401 attttgataaagatttataatgtttgtgcaatattcattaatttgatcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 30548302  T
Q  393 ttgcacgggtttgtaactagt 413  Q
      |||||||||||||||||||    
T  30548301 acgcacgggtttgtaactagt 30548281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 4634886 - 4634833
Alignment:
Q  314 tgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttttta 367  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  4634886 tgtttgtgcaatattcattaatttgctcatttttcctttggaacatttttttta 4634833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 39204807 - 39204908
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttc-ctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||||||| | |||||| |||||||||  ||||||||| ||||||||| | |||| |||||| |||| ||||   |||||||||||||||||||    
T  39204807 gtttgtgcaatatttattaatttactcatttttttctttggaactaattttttataagataagttattcaacctgtgcaaagcacgggtttgtaactagt 39204906  T
Q  414 tt 415  Q
    ||    
T  39204907 tt 39204908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 32847197 - 32847240
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  32847197 atacgttattcaacccgtgctttgcacgggtttgtaactagttt 32847240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 21543180 - 21543253
Alignment:
Q  317 ttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgc 391  Q
    ||||||||||| || ||||||||||||||||| |||| ||| ||||||||| | ||||||||||| |||||||||    
T  21543180 ttgtgcaatatccattaatttgctcatttttcttttgaaac-aattttttataagatacgttattcaacccgtgc 21543253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 2680327 - 2680234
Alignment:
Q  322 caatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||||||| ||||||||  ||| |||||||| || ||||||||| |||  |||||| ||| |||||||||   |||||||||||||||||||||    
T  2680327 caatattccgtaatttgaacatctttcctttagagcaaatttttaaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 2680234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 415
Target Start/End: Complemental strand, 32569656 - 32569575
Alignment:
Q  334 atttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||| ||||||   ||||| |  |||||| ||| |||||||||   |||||||||||||||||||||    
T  32569656 atttgctcatttttcctttagaacaatcattttagaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 32569575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 29434217 - 29434314
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacg-ttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||||||| | ||||||| ||||||||  || ||||||| ||||||| | |||||| ||||| ||||||||    |||||||||||||||||||    
T  29434217 gtttgtgcaatatttattaatttgttcattttt--ttaggaacaatttttttacaagatacgtttattcaacccgtgtgaagcacgggtttgtaactagt 29434314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 4464395 - 4464352
Alignment:
Q  372 atacgttattgaacccgtgcttt-gcacgggtttgtaactagtt 414  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  4464395 atacgttattcaacccgtgctttcgcacgggtttgtaactagtt 4464352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 27273878 - 27273921
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  27273878 atacgttattgaacccgtgcgaagcacgggtttgtaactagttt 27273921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 28940805 - 28940714
Alignment:
Q  322 caatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||| ||| ||||||||  ||| | |||||| ||||||||||||||||   ||||| ||| |||||||||   |||||||||||||||||||    
T  28940805 caatgttctgtaatttgaacatctctcctttagaacaaattttttaaaaagtacgtaattcaacccgtgcgaagcacgggtttgtaactagt 28940714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 41531811 - 41531768
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||||||||| |||||||| || |||||||||||||||||||||    
T  41531811 atacgttattcaacccgtgtttcgcacgggtttgtaactagttt 41531768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 416
Target Start/End: Complemental strand, 42060701 - 42060659
Alignment:
Q  374 acgttattgaacccgtgctttgcacgggtttgtaactagtttg 416  Q
    ||||||||||||||||||   ||||||||||||||||||||||    
T  42060701 acgttattgaacccgtgcgaagcacgggtttgtaactagtttg 42060659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 6300528 - 6300487
Alignment:
Q  374 acgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||   |||||||||||||||||||||    
T  6300528 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 6300487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 415
Target Start/End: Original strand, 37029917 - 37029958
Alignment:
Q  374 acgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||   |||||||||||||||||||||    
T  37029917 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 37029958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 28565528 - 28565428
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||   ||||||||||||||||||||    
T  28565528 gtttgtgcaatattcattaatttgctcatttttcctttggaacaatttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 28565429  T
Q  415 t 415  Q
    |    
T  28565428 t 28565428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 28631754 - 28631854
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||   ||||||||||||||||||||    
T  28631754 gtttgtgcaatattcattaatttgctcatttttcctttggaacaaattttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 28631853  T
Q  415 t 415  Q
    |    
T  28631854 t 28631854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 315 - 393
Target Start/End: Original strand, 15317589 - 15317667
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctt 393  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||    
T  15317589 gtttgtgcaatattcattaatttgctcatttttcctttggaacaatttttttacaagatacgttattcaacccgtgctt 15317667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 12714915 - 12714981
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttatt 381  Q
    |||||||||||||||| ||||||||||||||||||||||||||||  |||||| | |||||||||||    
T  12714915 gtttgtgcaatattcattaatttgctcatttttcctttggaacaatatttttacaagatacgttatt 12714981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 415
Target Start/End: Complemental strand, 23909828 - 23909714
Alignment:
Q  302 aaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaa-attttttaaaggatacgttattgaacccgtgctttgcacgg 400  Q
    |||||||| |||||||||||||||||||  |||||||||||||||| ||||| |||||  ||||||| |  ||| ||| || |||||||||   ||||||    
T  23909828 aaatatttctaatgtttgtgcaatattccttaatttgctcattttttctttgaaacaattttttttacaaaatatgttcttcaacccgtgcgaagcacgg 23909729  T
Q  401 gtttgtaactagttt 415  Q
    |||||||||||||||    
T  23909728 gtttgtaactagttt 23909714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 301 - 415
Target Start/End: Complemental strand, 34265988 - 34265874
Alignment:
Q  301 taaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgg 400  Q
    ||||||||| ||||||||||| |||||||  |||||||||||||||| ||||| ||||| ||||||| |  ||||| |||| |||||||||   |||| |    
T  34265988 taaatatttctaatgtttgtgaaatattccttaatttgctcattttttctttgaaacaatttttttacaatatacgatattcaacccgtgcgaagcacag 34265889  T
Q  401 gtttgtaactagttt 415  Q
    |||||||| ||||||    
T  34265888 gtttgtaattagttt 34265874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 13662218 - 13662116
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaa-attttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| ||  ||||||| | |||| |||||| |||||||||   ||||||||||||||||| |    
T  13662218 gtttgtacaatattcattaatttgatcatttttcctttggaataattttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactaat 13662119  T
Q  414 ttg 416  Q
    |||    
T  13662118 ttg 13662116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 48183509 - 48183440
Alignment:
Q  229 tttgacagtttatcgttttagtagcgactcagattcaaatactaataagttttagcaattaacaaatttt 298  Q
    |||||||||||| | |||||||||||| |||  |||||||||||||||||||||||||| ||||| ||||    
T  48183509 tttgacagtttaacattttagtagcgattcaagttcaaatactaataagttttagcaataaacaattttt 48183440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 1954453 - 1954373
Alignment:
Q  301 taaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttatt 381  Q
    |||| |||| |||| |||||| |||||||| |||||||||||||||| |||||||| || ||||||| | |||||||||||    
T  1954453 taaagatttctaatatttgtgtaatattcattaatttgctcattttttctttggaataatttttttacaagatacgttatt 1954373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 9112131 - 9112234
Alignment:
Q  312 aatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaacta 411  Q
    ||||||||||||||||| | ||||||||||||||||| |||  ||||| ||||||| | |||| |||||| || ||||||    ||||| ||||||||||    
T  9112131 aatgtttgtgcaatatttattaatttgctcatttttcttttaaaacaatttttttataagatatgttatttaatccgtgcgaaacacggatttgtaacta 9112230  T
Q  412 gttt 415  Q
    ||||    
T  9112231 gttt 9112234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 17672387 - 17672429
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||| ||||||||||||||||| ||||||||||||||||||||    
T  17672387 atacattattgaacccgtgcttcgcacgggtttgtaactagtt 17672429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 18815127 - 18815169
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  18815127 atacgttattaaacccgtgcttcgcacgggtttgtaactagtt 18815169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 29693365 - 29693431
Alignment:
Q  349 ctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||| ||||||||||||||||  |||||| ||| |||||||||   |||||||||||||||||||||    
T  29693365 ctttagaacaaattttttaaaaaatacgtaattcaacccgtgcgaagcacgggtttgtaactagttt 29693431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 4893938 - 4894011
Alignment:
Q  342 atttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||| ||||| ||||| || ||||||||  |||||||||| |||||||||   |||||||||||||||||||||    
T  4893938 atttctccttcggaactaaatttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 4894011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 3929800 - 3929746
Alignment:
Q  361 ttttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||| | ||||||||||| |||||||||   |||||||||||||||||||||    
T  3929800 ttttttataagatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 3929746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 44407294 - 44407336
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  44407294 atacgttattgaacccgtgcgaagcacgggtttgtaactagtt 44407336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 24294869 - 24294910
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  24294869 atacgttattgaacccgtgcgaagcacgggtttgtaactagt 24294910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 31620599 - 31620640
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  31620599 atacgttattgaacccgtgcgaagcacgggtttgtaactagt 31620640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 61656 - 61754
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||   |||||||||||||||||||    
T  61656 gtttgtgcaatattcattaatttgctcatttttcctttggaacaaattttttacaagatacgatattcaacccgtgcgaagcacgggtttgtaactagt 61754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 294 - 415
Target Start/End: Original strand, 12945 - 13066
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctt 393  Q
    |||||| ||||||||| ||||||||||||||| ||   |||||| ||||||||||||||||||||| ||||||| | ||||||||||| |||||||||      
T  12945 attttgataaatatttttaatgtttgtgcaatttttcttaatttcctcatttttcctttggaacaatttttttacaagatacgttattcaacccgtgcga 13044  T
Q  394 tgcacgggtttgtaactagttt 415  Q
     |||||||||||||||||||||    
T  13045 agcacgggtttgtaactagttt 13066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 4e-28; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 9226119 - 9226019
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||| |||||| |||||||||   ||||||||||||||||||||    
T  9226119 gtttgtgcaatattcattaatttgctcatttttcctttggaacaatttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 9226020  T
Q  415 t 415  Q
    |    
T  9226019 t 9226019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 42996884 - 42996984
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| |||| ||||   ||||||||||||||||||||    
T  42996884 gtttgtgcaatattcattaatttgctcatttttcctttggaacaaattttttacaagatatgttattcaacctgtgcgaagcacgggtttgtaactagtt 42996983  T
Q  415 t 415  Q
    |    
T  42996984 t 42996984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 38434376 - 38434277
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||| |||||| |||||||||   ||||||||||||||||||||    
T  38434376 gtttgtgcaatattcattaatttgctcatttttcctttggaacaatttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactagtt 38434277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 294 - 415
Target Start/End: Original strand, 20765532 - 20765654
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  20765532 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 20765631  T
Q  393 ttgcacgggtttgtaactagttt 415  Q
      |||||||||||||||||||||    
T  20765632 acgcacgggtttgtaactagttt 20765654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 296 - 413
Target Start/End: Complemental strand, 23476705 - 23476587
Alignment:
Q  296 tttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaat-tttttaaaggatacgttattgaacccgtgcttt 394  Q
    |||| ||||||||| ||||||||||||||||||   ||||||||||||||||||||| |||||| | |||||| | |||| |||||| ||||||||        
T  23476705 tttgataaatatttctaatgtttgtgcaatatttcttaatttgctcatttttcctttagaacaattatttttataagatatgttattcaacccgtgtgaa 23476606  T
Q  395 gcacgggtttgtaactagt 413  Q
    |||||||||||||||||||    
T  23476605 gcacgggtttgtaactagt 23476587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 294 - 415
Target Start/End: Original strand, 29491110 - 29491232
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  29491110 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 29491209  T
Q  393 ttgcacgggtttgtaactagttt 415  Q
      |||||||||||||||||||||    
T  29491210 acgcacgggtttgtaactagttt 29491232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 19033766 - 19033645
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  19033766 attttgataaaaatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 19033667  T
Q  393 ttgcacgggtttgtaactagtt 414  Q
      ||||||||||||||||||||    
T  19033666 acgcacgggtttgtaactagtt 19033645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 294 - 414
Target Start/End: Original strand, 20720870 - 20720991
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  20720870 attttgataaaaatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 20720969  T
Q  393 ttgcacgggtttgtaactagtt 414  Q
      ||||||||||||||||||||    
T  20720970 acgcacgggtttgtaactagtt 20720991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 42298926 - 42298831
Alignment:
Q  295 ttttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtg 390  Q
    ||||| |||||||||||||||||||||||||||||  ||||| | ||||||||  ||| |||||| ||||||| | ||||||||||| ||||||||    
T  42298926 ttttgataaatatttataatgtttgtgcaatattccttaattagttcattttttgtttagaacaatttttttacaagatacgttattcaacccgtg 42298831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 295 - 366
Target Start/End: Original strand, 45121953 - 45122024
Alignment:
Q  295 ttttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttttt 366  Q
    ||||| ||||||||| ||||||||||||| |||||  |||||||||||||||| ||||||||||||||||||    
T  45121953 ttttgataaatatttctaatgtttgtgcactattccttaatttgctcattttttctttggaacaaatttttt 45122024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 332 - 413
Target Start/End: Original strand, 1483698 - 1483779
Alignment:
Q  332 taatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    ||||||||||||||||||||| |||||| | ||||| |  ||| |||||| ||||||||||| |||||||||||||||||||    
T  1483698 taatttgctcatttttcctttagaacaattattttacaaaatatgttattaaacccgtgcttcgcacgggtttgtaactagt 1483779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 294 - 366
Target Start/End: Original strand, 8998426 - 8998498
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttttt 366  Q
    |||||| ||||||||| |||||||| |||| |||||  |||||||||||||||||||||||||||| ||||||    
T  8998426 attttgataaatatttctaatgtttttgcactattccttaatttgctcatttttcctttggaacaattttttt 8998498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 34282214 - 34282160
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttc 348  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  34282214 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttc 34282160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 33230072 - 33230018
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttc 348  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||    
T  33230072 attttgataaagatttataatgtttgtgcaatattcattaatttgcttatttttc 33230018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 42244679 - 42244627
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttttta 367  Q
    |||||||||||||||| ||||||| |||||||| ||| |||||||||||||||    
T  42244679 gtttgtgcaatattcattaatttgttcattttttcttaggaacaaatttttta 42244627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 1484767 - 1484849
Alignment:
Q  332 taatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||| |||||| | ||||| |  ||| |||||| |||||||||   ||||||||||||||| ||||    
T  1484767 taatttgctcatttttcctttagaacaattattttacaaaatatgttattaaacccgtgcgaagcacgggtttgtaaccagtt 1484849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 21669303 - 21669229
Alignment:
Q  342 atttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtttg 416  Q
    |||| ||||||||| | || ||||||||  |||||||||| |||||||||   ||||||||||||||||||||||    
T  21669303 atttctcctttggagctaaatttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtttg 21669229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 3795712 - 3795753
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  3795712 atacgttattcaacccgtgcttcgcacgggtttgtaactagt 3795753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 20266737 - 20266790
Alignment:
Q  229 tttgacagtttatcgttttagtagcgactcagattcaaatactaataagtttta 282  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||||| |||||    
T  20266737 tttgacggtttatcgttttagtagcgattcaagttcaaatactaataaatttta 20266790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 27840487 - 27840556
Alignment:
Q  345 tttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||| ||||||| || ||||||| | ||||||||||| |||||||||   ||||||||||||||||||||    
T  27840487 tttcttttggaataatttttttacaagatacgttattcaacccgtgcaaagcacgggtttgtaactagtt 27840556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 332 - 415
Target Start/End: Complemental strand, 2067931 - 2067847
Alignment:
Q  332 taatttgctcatttttcctttggaacaa-attttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||||| ||||||  ||||||| | ||||| ||||| || ||||||   |||||| ||||||||||||||    
T  2067931 taatttgctcatttttcctttagaacaattttttttataagatacattattcaatccgtgcgaagcacggatttgtaactagttt 2067847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 342 - 414
Target Start/End: Complemental strand, 31896885 - 31896813
Alignment:
Q  342 atttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||| ||||| ||||| || ||||||||  |||||||||| |||||||||   ||||||||||||||||||||    
T  31896885 atttctccttcggaactaaatttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 31896813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 358 - 416
Target Start/End: Original strand, 691275 - 691333
Alignment:
Q  358 aaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtttg 416  Q
    |||||||| |||  |||||||||| |||||||||   ||||||||||||||||||||||    
T  691275 aaatttttaaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagtttg 691333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 1483483 - 1483541
Alignment:
Q  229 tttgacagtttatcgttttagtagcgactcagattcaaatactaataagttttagcaat 287  Q
    ||||||| ||||||||||||| |||| |||| |||||||| || |||| ||||||||||    
T  1483483 tttgacaatttatcgttttagcagcggctcaaattcaaattctgataaattttagcaat 1483541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 8925267 - 8925225
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  8925267 atacgttattgaacccgtgcggagcacgggtttgtaactagtt 8925225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 12960596 - 12960649
Alignment:
Q  361 ttttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||| | ||||||||||| |||||||||   ||||||||||||||||||||    
T  12960596 ttttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 12960649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 17817689 - 17817762
Alignment:
Q  342 atttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||||||||||  ||||| ||||||| |  | |||||||| |||||||||   |||||||||||||||||||||    
T  17817689 atttttcctttaaaacaatttttttacaaaacacgttattcaacccgtgcgaagcacgggtttgtaactagttt 17817762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 19124104 - 19124165
Alignment:
Q  332 taatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctt 393  Q
    |||||||||||||| || ||| |||||| ||||||| |  |||||||||| |||||||||||    
T  19124104 taatttgctcatttctcatttagaacaatttttttacaaaatacgttattcaacccgtgctt 19124165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 39278228 - 39278281
Alignment:
Q  362 tttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||  |||||||||| |||||||||   |||||||||||||||||||||    
T  39278228 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 39278281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 415
Target Start/End: Complemental strand, 47573372 - 47573331
Alignment:
Q  374 acgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||   |||||||||||||||||||||    
T  47573372 acgttattgaacccgtgcgaagcacgggtttgtaactagttt 47573331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 4e-28; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 294 - 414
Target Start/End: Complemental strand, 2624841 - 2624721
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctt 393  Q
    |||||| ||||||||| ||||||||||||||| ||   |||||| ||||||||||||||| ||||| ||||||| | ||||||||||| |||||||||      
T  2624841 attttgataaatatttttaatgtttgtgcaatttttcttaattttctcatttttcctttgaaacaatttttttacaagatacgttattcaacccgtgcga 2624742  T
Q  394 tgcacgggtttgtaactagtt 414  Q
    |||||||||||||||||||||    
T  2624741 tgcacgggtttgtaactagtt 2624721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 315 - 414
Target Start/End: Original strand, 1932283 - 1932382
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||| |||| |||||||||   ||||||||||||||||||||    
T  1932283 gtttgtgcaatattcattaatttgctcattttttctttggaacaaattttttacaagatacgatattcaacccgtgcgaagcacgggtttgtaactagtt 1932382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 22975837 - 22975740
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgc 391  Q
    |||||| ||||||||| ||||||||||||||| ||   |||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||    
T  22975837 attttgataaatatttttaatgtttgtgcaatttttcttaatttgctcatttttcctttggaacaatttttttacaagatacgttattcaacccgtgc 22975740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 294 - 391
Target Start/End: Original strand, 23812564 - 23812661
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgc 391  Q
    |||||| ||||||||| ||||||||||||||| ||   |||||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||    
T  23812564 attttgataaatatttttaatgtttgtgcaatttttcttaatttgctcatttttcctttggaacaatttttttacaagatacgttattcaacccgtgc 23812661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 4425851 - 4425951
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||||||||||| |||||||| || ||||||| | ||||||||| | |||||||||    |||||||||||||||||||    
T  4425851 gtttgtgcaatattcattaatttgctcattttttctttggaataatttttttacaagatacgttagtcaacccgtgcgaaacacgggtttgtaactagtt 4425950  T
Q  415 t 415  Q
    |    
T  4425951 t 4425951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 294 - 413
Target Start/End: Original strand, 33979106 - 33979226
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaa-attttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||| || ||  ||||||| |  |||||||||| |||||||||     
T  33979106 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttgaaataattttttttacaaaatacgttattaaacccgtgcg 33979205  T
Q  393 ttgcacgggtttgtaactagt 413  Q
       ||||||||||||||||||    
T  33979206 aaacacgggtttgtaactagt 33979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 294 - 415
Target Start/End: Original strand, 250045 - 250167
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  250045 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 250144  T
Q  393 ttgcacgggtttgtaactagttt 415  Q
      |||||||||||||||||||||    
T  250145 acgcacgggtttgtaactagttt 250167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 294 - 415
Target Start/End: Complemental strand, 12579897 - 12579775
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaaca-aattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||  || |   ||||||| |  |||||||||| |||||||||     
T  12579897 attttgataaagatttataatgtttgtgcaatattcattaatttgctcatttttcttttaaaatatttttttttataaaatacgttattaaacccgtgca 12579798  T
Q  393 ttgcacgggtttgtaactagttt 415  Q
      |||||||||||||||||||||    
T  12579797 acgcacgggtttgtaactagttt 12579775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 415
Target Start/End: Original strand, 33318995 - 33319092
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||| | |||||   || |||||||||||||| | ||||||||||| |||||||||   ||||||||||||||||||||    
T  33318995 gtttgtgcaatattcattaatttgcactttttt---tttgaacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 33319091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 301 - 414
Target Start/End: Original strand, 33300597 - 33300710
Alignment:
Q  301 taaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgg 400  Q
    ||||||||| ||||||||||| |||||||  |||||| ||||||||||||||| |||||  |||||| |  ||||| |||| |||||||||   | ||||    
T  33300597 taaatatttctaatgtttgtgaaatattccttaatttactcatttttcctttgaaacaatatttttacaatatacgatattcaacccgtgcgaagtacgg 33300696  T
Q  401 gtttgtaactagtt 414  Q
    ||||||||||||||    
T  33300697 gtttgtaactagtt 33300710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 3052125 - 3052052
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttttta 367  Q
    |||||| |||| ||||||||| ||||||||||||||| |||||||||||||||| |||  |||||| |||||||    
T  3052125 attttgataaagatttataatatttgtgcaatattcattaatttgctcattttttcttcagaacaattttttta 3052052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 415
Target Start/End: Complemental strand, 5753213 - 5753125
Alignment:
Q  323 aatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||||||| ||||||||||||||||  |||  ||||||||||||| |  |||||||||| |||||||||   | |||||||||||||||||||    
T  5753213 aatattcattaatttgctcattttt--ttt--aacaaattttttacaatatacgttattcaacccgtgcgaagtacgggtttgtaactagttt 5753125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 8615029 - 8615102
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgc 391  Q
    |||||||||||||||| |||||||| | |||||   || |||||||||||||| | ||||||||||| |||||||||    
T  8615029 gtttgtgcaatattcattaatttgcactttttt---tttgaacaaattttttacaagatacgttattcaacccgtgc 8615102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 6966292 - 6966235
Alignment:
Q  358 aaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||  |||||||||| |||||||||   |||||||||||||||||||||    
T  6966292 aaattttttaaataatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 6966235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 2522024 - 2522066
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  2522024 atacgttattgaacccgtgcgaagcacgggtttgtaactagtt 2522066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 415
Target Start/End: Original strand, 11207646 - 11207700
Alignment:
Q  361 ttttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||||||||  |||| | ||| ||||||||||| |||||||||||||||||||||    
T  11207646 ttttttaaaaaatacataatttaacccgtgcttcgcacgggtttgtaactagttt 11207700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 18389219 - 18389166
Alignment:
Q  362 tttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||||| | ||||||||||| |||||||||   |||||||||||||||||||||    
T  18389219 tttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 18389166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 24447785 - 24447838
Alignment:
Q  362 tttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||  |||||||||| |||||||||   |||||||||||||||||||||    
T  24447785 tttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 24447838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 294 - 413
Target Start/End: Complemental strand, 44186978 - 44186859
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctt 393  Q
    ||||||||||| |||| ||||||||||||||||| || ||||||||  ||||||| ||||||||||  |||||| | | ||||||||||||| |||||      
T  44186978 attttggtaaaaatttctaatgtttgtgcaatatccattaatttgcctatttttcgtttggaacaatatttttacaagttacgttattgaactcgtgcga 44186879  T
Q  394 tgcacgggtttgtaactagt 413  Q
     |||||||||||||||||||    
T  44186878 agcacgggtttgtaactagt 44186859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 315 - 415
Target Start/End: Complemental strand, 12157807 - 12157707
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||  ||| |||||||||   | |||| |||||||||||||    
T  12157807 gtttgagcaatattcattaatttgctcatttttcctttggaacaatttttttacaggatacgaaattcaacccgtgcgaagtacggatttgtaactagtt 12157708  T
Q  415 t 415  Q
    |    
T  12157707 t 12157707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 414
Target Start/End: Complemental strand, 22759174 - 22759056
Alignment:
Q  295 ttttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgcttt 394  Q
    ||||| ||||||||| |||||||||||||||||||  ||||||||| |||||||||||| ||||| ||||||| |  ||| ||| || |||||||||       
T  22759174 ttttgataaatatttctaatgtttgtgcaatattccttaatttgct-atttttcctttgaaacaatttttttacaaaatatgttcttcaacccgtgcgaa 22759076  T
Q  395 gcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||    
T  22759075 gcacgggtttgtaactagtt 22759056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 294 - 413
Target Start/End: Original strand, 30766428 - 30766547
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctt 393  Q
    |||||| ||||||||| |||||||| || |||||||  |||||| || |||||||||||||||||| | ||||| | ||||||||||| |||||||||      
T  30766428 attttgataaatatttctaatgtttatgtaatattccttaatttacttatttttcctttggaacaattgttttacaagatacgttattcaacccgtgcga 30766527  T
Q  394 tgcacgggtttgtaactagt 413  Q
     |||| ||||||||||||||    
T  30766528 agcacaggtttgtaactagt 30766547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 54792789 - 54792724
Alignment:
Q  316 tttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttatt 381  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||||||||||    
T  54792789 tttgtgcaatattcattaatttgctcatttttcctttggaacaatttttttacaagatacgttatt 54792724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 35437198 - 35437264
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttatt 381  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||    
T  35437198 gtttgtgcaatattcattaatttgctcattttttctttggaacaaattttttacaatatacgttatt 35437264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 315 - 416
Target Start/End: Original strand, 16496319 - 16496421
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaa-attttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| ||  ||||||| | |||| |||||| |||||||||   ||||||||||||||||| |    
T  16496319 gtttgtacaatattcattaatttgatcatttttcctttggaataattttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactaat 16496418  T
Q  414 ttg 416  Q
    |||    
T  16496419 ttg 16496421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 315 - 392
Target Start/End: Complemental strand, 36164927 - 36164850
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgct 392  Q
    |||||||||||||| | |||||| ||||||||| |||| |||||| ||||||| | ||||||||||| ||||||||||    
T  36164927 gtttgtgcaatattaattaatttactcattttttctttagaacaatttttttacaagatacgttattcaacccgtgct 36164850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 918819 - 918872
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcattttt 347  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||| |||||    
T  918819 attttgataaagatttataatgtttgtgcaatattcattaatttgctctttttt 918872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 294 - 347
Target Start/End: Complemental strand, 44072827 - 44072774
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcattttt 347  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||    
T  44072827 attttgataaagatttataatgtttgtgcaatattcattaatttgctaattttt 44072774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 362 - 415
Target Start/End: Complemental strand, 48519707 - 48519654
Alignment:
Q  362 tttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||  |||||||||| ||||||||||| |||||||||||||||||||||    
T  48519707 tttttaaaaaatacgttattcaacccgtgcttcgcacgggtttgtaactagttt 48519654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 26035911 - 26035813
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||| | |||||||| |||||||  |||| || |||| ||||| | ||||| ||||| |||||||||   ||||||||||||||||||||    
T  26035911 gtttgtgcaatatttattaatttgcacattttttttttgaaa-aaatattttacaagatacattattcaacccgtgcgacgcacgggtttgtaactagtt 26035813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 360
Target Start/End: Complemental strand, 6093263 - 6093197
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaa 360  Q
    ||||||||||| |||| ||||||||||||||||| || ||||||||| ||||||  ||| |||||||    
T  6093263 attttggtaaaaatttctaatgtttgtgcaatatccattaatttgcttattttttgtttagaacaaa 6093197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 5240958 - 5241031
Alignment:
Q  342 atttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||| |||||| ||||||| |  | |||||||| |||||||||   |||||||||||||||||||||    
T  5240958 atttttcctttagaacaatttttttacaaaacacgttattcaacccgtgcgaagcacgggtttgtaactagttt 5241031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 8396752 - 8396809
Alignment:
Q  358 aaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||  |||||||||| |||||||||   |||||||||||||||||||||    
T  8396752 aaattttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 8396809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 18688660 - 18688716
Alignment:
Q  358 aaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||  |||||||||| |||||||||   ||||||||||||||||||||    
T  18688660 aaattttttaaataatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 18688716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 50742296 - 50742339
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||||   |||||||||||||||||||||    
T  50742296 atacgttattgaacccgtgcgaagcacgggtttgtaactagttt 50742339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 19406667 - 19406625
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||| |||||||| |||||| ||||||||||||||||||||    
T  19406667 atacgtcattgaacctgtgcttcgcacgggtttgtaactagtt 19406625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 51249228 - 51249269
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||||||||||||||||| | |||||| ||||||||||||    
T  51249228 atacgttattgaacccgtgcatagcacggatttgtaactagt 51249269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 391
Target Start/End: Complemental strand, 8421 - 8336
Alignment:
Q  306 atttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgc 391  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| | |||| |||||| ||| |||||    
T  8421 atttctaatgtttgtgcaatattcattaatttgctcatttttcctttggaacaatttttttacaagatatgttattcaacacgtgc 8336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 366
Target Start/End: Complemental strand, 10764 - 10693
Alignment:
Q  295 ttttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttttt 366  Q
    ||||| ||||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  10764 ttttgataaatatttctaatgtttgtgcactattccttaatttgctcatttttcctttggaacaaatttttt 10693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 10879 - 10783
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||| ||||| |||||||| |||||||  ||   ||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||    
T  10879 gtttgtgcaagattcattaatttgcacattttttttt---aacaaattttttacaagatacgttattcaacccgtgcttcgcacgggtttgtaactagtt 10783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 25016 - 24916
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    |||||||||||||||| |||||||| | |||||  |||| ||||||||||||| | ||||||||||| |||||||||   ||||||||||||||||||||    
T  25016 gtttgtgcaatattcattaatttgcactttttttttttg-aacaaattttttacaagatacgttattcaacccgtgcgaagcacgggtttgtaactagtt 24918  T
Q  415 tg 416  Q
    ||    
T  24917 tg 24916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 294 - 366
Target Start/End: Complemental strand, 33507 - 33435
Alignment:
Q  294 attttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaaatttttt 366  Q
    |||||| ||||||||| |||||||||||||  ||||  |||||||||||||||||||||||||||||||||||    
T  33507 attttgataaatatttctaatgtttgtgcacgattccttaatttgctcatttttcctttggaacaaatttttt 33435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 81010 - 81073
Alignment:
Q  296 tttggtaaatatttataatgtttgtgcaatattcagtaatttgctcatttttcctttggaacaa 359  Q
    |||| ||||||||||||||||| |||||||||||  |||||||||||||||||||||| |||||    
T  81010 tttgataaatatttataatgttcgtgcaatattccttaatttgctcatttttcctttgaaacaa 81073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 151980 - 151878
Alignment:
Q  315 gtttgtgcaatattcagtaatttgctcatttttcctttggaacaa-attttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    |||||| ||||||||| ||||||| ||||||||||||||||| ||  ||||||| | |||| |||||| |||||||||   ||||||||||||||||| |    
T  151980 gtttgtacaatattcattaatttgatcatttttcctttggaataattttttttacaagatatgttattcaacccgtgcgaagcacgggtttgtaactaat 151881  T
Q  414 ttg 416  Q
    |||    
T  151880 ttg 151878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1891 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1891
Description:

Target: scaffold1891; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 415
Target Start/End: Original strand, 330 - 374
Alignment:
Q  372 atacgttattgaacccgtgcttt-gcacgggtttgtaactagttt 415  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  330 atacgttattgaacccgtgctttcgcacgggtttgtaactagttt 374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 3479 - 3423
Alignment:
Q  358 aaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||  |||||||||| ||||||||||| |||||||||| |||||||||    
T  3479 aaattttttaaaaaatacgttattcaacccgtgcttcgcacgggtttataactagtt 3423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 14618 - 14691
Alignment:
Q  342 atttttcctttggaacaaattttttaaaggatacgttattgaacccgtgctttgcacgggtttgtaactagttt 415  Q
    |||| ||||| ||||| || ||||||||  |||||||||| |||||||||   |||||||||||||||||||||    
T  14618 atttctccttcggaactaaatttttaaaaaatacgttattcaacccgtgcgaagcacgggtttgtaactagttt 14691  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 29680 - 29638
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  29680 atacgttattgaacccgtgcgaagcacgggtttgtaactagtt 29638  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 5400 - 5441
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagtt 414  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  5400 atacgttattgaacccgtg-ttcgcacgggtttgtaactagtt 5441  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 25655 - 25614
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  25655 atacgttattgaacccgtgcgaagcacgggtttgtaactagt 25614  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 10865 - 10906
Alignment:
Q  372 atacgttattgaacccgtgctttgcacgggtttgtaactagt 413  Q
    ||||||||||||||||||||   |||||||||||||||||||    
T  10865 atacgttattgaacccgtgcgaagcacgggtttgtaactagt 10906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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