View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_71 (Length: 385)
Name: NF9264_low_71
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 53475131 - 53474929
Alignment:
| Q |
15 |
cagagaagtacatggcttaagaaaattcaacctcaagaaggcaatgccatagaccaacattaaccaaaagactatctaaccaaacaaagagagggttt-- |
112 |
Q |
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| T |
53475131 |
cagagaagtaaatggcttaagaaaattcaacctcaagaaggcaatgccatagaccaacattaaccaaaagactatctaaccaaacaaagagagggtttta |
53475032 |
T |
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| Q |
113 |
--tactacccccactcgtagaaagttcaaggagacccataagacttacccgaaaaccattttcaaagatagaaactaacgcgatccactgattgctcaaa |
210 |
Q |
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| T |
53475031 |
cgtactacccccactcgtagaaagttcaaggagacccataagacttactcgaaaaccattttcaaagattgaaactaacgcgatccactaattgctcaaa |
53474932 |
T |
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| Q |
211 |
att |
213 |
Q |
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||| |
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| T |
53474931 |
att |
53474929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 327
Target Start/End: Complemental strand, 53474929 - 53474853
Alignment:
| Q |
251 |
ttgagatcaaccaaccactctacaaaataccaaaccaaagccaacaaaatcatgagttgagagccacttcaaaaggt |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
53474929 |
ttgagatcaaccaaccactctacaaaataccaaaccaaagccaacaaaatcatgaattgagagccacttcaaaaggt |
53474853 |
T |
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