View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_73 (Length: 377)
Name: NF9264_low_73
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 25011955 - 25011591
Alignment:
| Q |
1 |
acacctcttcaacacaacaccatgagagagatagaaatacctcttctacaccacaccatgaaagagatagaattagatacagtatgttggtgaagtcatg |
100 |
Q |
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| T |
25011955 |
acacctcctcaacacaacaccatcagagagatagaaatacctcttctacaccacaccatgaaagagatggaattagatacagtatgttggtgaagtcatg |
25011856 |
T |
|
| Q |
101 |
ggaagagatatagagagaaaatagagaagttgttgaa--cgtgtaaagatattgaagatgtacaaatatcattgctcttatatacatatatcaattgtca |
198 |
Q |
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| T |
25011855 |
ggaagagatatagagagaaaatagagaagttgttgaatgagtgtaaagatattgaagatgtacaaatatcattgctcttatatacatatatcaattgtca |
25011756 |
T |
|
| Q |
199 |
aaatcaatagtttccaaataaatttgttcnnnnnnngtttccaaa-aaatgttaacgagtaatgtgtattcttagactttaaatatttggttatcggtag |
297 |
Q |
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| T |
25011755 |
aaatcaatagttttcaaataaatttgttcaaaaaaagtttccaaagaaatgttaacgagtaatgtgtattc-------ttaaatatttggttatctgtag |
25011663 |
T |
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| Q |
298 |
ttctttttgtgnnnnnnntatcattttaagggaatttatcactgaaatattattaaaactggtataggttct |
369 |
Q |
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| T |
25011662 |
ttctttttgtgaaaacaatatcattttaagggaatttatcactgaaatattattaaaaatgatataggttct |
25011591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 24986415 - 24986335
Alignment:
| Q |
110 |
atagagagaaaatagagaa-gttgttgaacg--tgtaaagatattgaagatgtacaaatatcattgctcttatatacatat |
187 |
Q |
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| T |
24986415 |
atagagagaaaatagaaaaagatgttgaatgagtgtaaagatattgaagatgtacaaatatcattacccttatatatatat |
24986335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 369
Target Start/End: Complemental strand, 11356639 - 11356540
Alignment:
| Q |
270 |
tagactttaaatatttggttatcggtagttctttttgtgnnnnnnntatcattttaagggaatttatcactgaaatattattaaaactggtataggttct |
369 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
11356639 |
tagactttaaatatttggttatttgtagttctttttgtgaaaacaatatcattttaagggaatttatcactgaaatattattaaaaatgatataggttct |
11356540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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