View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9264_low_76 (Length: 373)

Name: NF9264_low_76
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9264_low_76
NF9264_low_76
[»] chr3 (9 HSPs)
chr3 (18-373)||(11615549-11615910)
chr3 (83-373)||(11605424-11605714)
chr3 (179-368)||(13752876-13753065)
chr3 (179-368)||(13766279-13766468)
chr3 (204-364)||(14331576-14331736)
chr3 (204-364)||(14335536-14335696)
chr3 (204-314)||(14331413-14331523)
chr3 (204-314)||(14335373-14335483)
chr3 (230-369)||(13739417-13739556)
[»] chr6 (1 HSPs)
chr6 (175-368)||(35079174-35079367)
[»] chr2 (3 HSPs)
chr2 (204-325)||(8714961-8715082)
chr2 (206-314)||(8714820-8714931)
chr2 (211-294)||(8671994-8672077)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 11615910 - 11615549
Alignment:
Q  18 ctggattccatatctgtttcgtcttcgtcttcgtcttc------atcttcttcttgggatgaatataagcctgtgacaaatgaagacaacacaagtcaac 111  Q
    ||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  11615910 ctggattccatatctgtttcgtcttcgtcttcgtcttcctcttcatcttcttcttgggatgaatataagcctgtgataaataaagacaacacaagtcaac 11615811  T
Q  112 ttgccccggatccacttttgcttaaacctatgctgcgttggcaaagaaaacctccaagtccatctcctagacttttgccagaagttattgctttcactgt 211  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11615810 ttgcccctgatccacttttgcttaaacctatgctgtgttggcaaagaaaacctccaagtccagctcctagacttttgccagaagttattgctttcactgt 11615711  T
Q  212 tcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgtttgtgaaaaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615710 tcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgtttgtgaaaaa 11615611  T
Q  312 gcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggataacaa 373  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615610 gctcgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggataacaa 11615549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 83 - 373
Target Start/End: Original strand, 11605424 - 11605714
Alignment:
Q  83 tgtgacaaatgaagacaacacaagtcaacttgccccggatccacttttgcttaaacctatgctgcgttggcaaagaaaacctccaagtccatctcctaga 182  Q
    ||||||||||| ||||||||||| |||||||||||| || || |||  || || ||||   |  | || || ||| |||||||||||| || |||||| |    
T  11605424 tgtgacaaatggagacaacacaaatcaacttgcccctgaccctcttcggcgtagacctccacgacctttgcgaagcaaacctccaagttcagctcctaaa 11605523  T
Q  183 cttttgccagaagttattgctttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatata 282  Q
     ||||||||| ||||  ||| |||||||||||||||  ||| |||||||||||||||||| |||| |||||| ||||||||||||||||||| ||| |||    
T  11605524 gttttgccagtagttggtgcgttcactgttcaatgtaattcctgttataaatggaggttgattccaacaaagaaaaaatatgaagaaatacgggaacata 11605623  T
Q  283 tccttcaaaatccttttgtttgtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggataacaa 373  Q
     ||||||| |||||||| |||||| ||||||| |||||||||||||| || |||||||| ||| ||| |||||||||||||||||||||||    
T  11605624 accttcaacatccttttatttgtgtaaaagctcgtgagtggcgacccgatatatcttgtgatgatccagaggatgtttctcaggataacaa 11605714  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 13753065 - 13752876
Alignment:
Q  179 tagacttttgccagaagttattgctttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaa 278  Q
    |||| ||||||||| ||||  ||||||| |||||||||||  ||  |||| ||||||||||||   ||| ||  || |||||||||||||||||||||||    
T  13753065 tagagttttgccagtagttggtgctttcgctgttcaatgtcattactgttctaaatggaggttaactccaacggagaaaaaatatgaagaaatacgtgaa 13752966  T
Q  279 tatatccttcaaaatccttttgtttgtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggat 368  Q
     ||| ||||||| ||||||||||||||||||| ||| | |||||||||||  || | |||||| ||| ||| ||||||||||||||||||    
T  13752965 cataaccttcaacatccttttgtttgtgaaaatgctcgggagtggcgacctgatatttcttgtgatgatccagaggatgtttctcaggat 13752876  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 13766468 - 13766279
Alignment:
Q  179 tagacttttgccagaagttattgctttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaa 278  Q
    |||| ||||||||| ||||  ||||||| |||||||||||  ||  |||| ||||||||||||   ||| ||  || |||||||||||||||||||||||    
T  13766468 tagagttttgccagtagttggtgctttcgctgttcaatgtcattactgttctaaatggaggttaactccaacggagaaaaaatatgaagaaatacgtgaa 13766369  T
Q  279 tatatccttcaaaatccttttgtttgtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggat 368  Q
     ||| ||||||| ||||||||||||||||||| ||| | |||||||||||  || | |||||| ||| ||| ||||||||||||||||||    
T  13766368 cataaccttcaacatccttttgtttgtgaaaatgctcgggagtggcgacctgatatttcttgtgatgatccagaggatgtttctcaggat 13766279  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 364
Target Start/End: Complemental strand, 14331736 - 14331576
Alignment:
Q  204 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 303  Q
    |||| ||||||||||  ||| |||| ||||| ||||||  |||| |||||| |||||||||||||||||| |||| | ||  |||||||| |||||||||    
T  14331736 ttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgttt 14331637  T
Q  304 gtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctca 364  Q
    || ||||| |||| |||||||||| | || |||||||| ||| ||  ||||||||||||||    
T  14331636 gttaaaaatcttgggagtggcgacacgatatatcttgtgatggtcaagaggatgtttctca 14331576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 364
Target Start/End: Complemental strand, 14335696 - 14335536
Alignment:
Q  204 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 303  Q
    |||| ||||||||||  ||| |||| ||||| ||||||  |||| |||||| |||||||||||||||||| |||| | ||  |||||||| |||||||||    
T  14335696 ttcattgttcaatgtaattcctgttctaaatagaggttaattccaacaaagaaaaaatatgaagaaatacatgaacaaatttttcaaaattcttttgttt 14335597  T
Q  304 gtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctca 364  Q
    || ||||| |||| |||||||||| | || |||||||| ||| ||  ||||||||||||||    
T  14335596 gttaaaaatcttgggagtggcgacacgatatatcttgtgatggtcaagaggatgtttctca 14335536  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 14331413 - 14331523
Alignment:
Q  204 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 303  Q
    |||| ||||||||||| ||  |||  ||||||||||||  |||   ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  14331413 ttcagtgttcaatgtgatttctgtactaaatggaggttcattctagcaaagaaaaaatatgaagaaatacgtgaacatatcattcaaaatccttttgttt 14331512  T
Q  304 gtgaaaaagct 314  Q
    |||| ||||||    
T  14331513 gtgataaagct 14331523  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 14335373 - 14335483
Alignment:
Q  204 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 303  Q
    |||| ||||||||||| ||  |||  ||||||||||||  |||   ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  14335373 ttcagtgttcaatgtgatttctgtactaaatggaggttcattctagcaaagaaaaaatatgaagaaatacgtgaacatatcattcaaaatccttttgttt 14335472  T
Q  304 gtgaaaaagct 314  Q
    |||| ||||||    
T  14335473 gtgataaagct 14335483  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 369
Target Start/End: Complemental strand, 13739556 - 13739417
Alignment:
Q  230 taaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgtttgtgaaaaagcttgtgagtggcgaccc 329  Q
    ||||||||||||  |||| ||||||||||||||||||||||||| |||||||||   ||| |||  |||| |||||||||| | |||||||||||||||     
T  13739556 taaatggaggttaattccaacaaaggaaaaatatgaagaaatacttgaatatatgggtcagaatttttttttttgtgaaaatgtttgtgagtggcgacct 13739457  T
Q  330 tatctatcttgtaatgttccggaggatgtttctcaggata 369  Q
      | |||||||| ||| | | |||||| |||||| |||||    
T  13739456 ggtgtatcttgtgatgatacagaggatatttctccggata 13739417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 175 - 368
Target Start/End: Original strand, 35079174 - 35079367
Alignment:
Q  175 ctcctagacttttgccagaagttattgctttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacg 274  Q
    |||||||| ||||||||| ||||  ||||||||||||||||||||||   |||| ||||||||||||| |||| || |||||||||||||||||||| ||    
T  35079174 ctcctagagttttgccagcagttggtgctttcactgttcaatgtgctaactgttttaaatggaggttgattccaaccaaggaaaaatatgaagaaattcg 35079273  T
Q  275 tgaatatatccttcaaaatccttttgtttgtgaaaaagcttgtgagtggcgaccctatctatcttgtaatgttccggaggatgtttctcaggat 368  Q
    |||||||||||||||| | || ||||| ||||| |||||| |||||||||||||  || |||| ||| ||| ||| |||||| | |||||||||    
T  35079274 tgaatatatccttcaagaaccctttgtctgtgacaaagctcgtgagtggcgacctgatgtatcctgtgatgatccagaggatatctctcaggat 35079367  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 8715082 - 8714961
Alignment:
Q  204 ttcactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatccttttgttt 303  Q
    |||||||||||||||| ||| |||| ||||||||||||| |||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  8715082 ttcactgttcaatgtgattcgtgttctaaatggaggttgattccaacaaagaaaaaatatgaataaatacgtgaacatatccttcaaaatccttttgttt 8714983  T
Q  304 gtgaaaaagcttgtgagtggcg 325  Q
    |||| |||||| | ||||||||    
T  8714982 gtgataaagctcgggagtggcg 8714961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 8714820 - 8714931
Alignment:
Q  206 cactgttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatata---tccttcaaaatccttttgtt 302  Q
    |||||||||||||| ||| |||| ||||||||||||  |||| |||||| ||||||||||||||||| ||||| |||   ||||||| |||| |||||||    
T  8714820 cactgttcaatgtgattcctgttctaaatggaggttaattccaacaaagaaaaaatatgaagaaatatgtgaacatatcctccttcacaatcattttgtt 8714919  T
Q  303 tgtgaaaaagct 314  Q
    ||||| ||||||    
T  8714920 tgtgataaagct 8714931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 8671994 - 8672077
Alignment:
Q  211 ttcaatgtgcttcttgttataaatggaggttggttccgacaaaggaaaaatatgaagaaatacgtgaatatatccttcaaaatc 294  Q
    ||||||||| ||| |||| ||||||||||||| |||| |||||| ||||||||||||||||| ||||| |||||||||| ||||    
T  8671994 ttcaatgtgattcctgttctaaatggaggttgattccaacaaagaaaaaatatgaagaaatatgtgaacatatccttcacaatc 8672077  T

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