View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_78 (Length: 372)
Name: NF9264_low_78
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 34851657 - 34852012
Alignment:
| Q |
1 |
ttcaaaatagccactagaaagatgattgttattattcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgc |
100 |
Q |
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| T |
34851657 |
ttcaaaatagccactagaaagatgattgttattattcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgc |
34851756 |
T |
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| Q |
101 |
ttcaagaggggactggtgggaaggtaggactaggaaccataatttaatttattttggctaagaaaagttttcataattaaaaactagatattaaaatatg |
200 |
Q |
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| T |
34851757 |
ttcaagaggggactggtgggaaggtaggactaggaaccataatttaatttattttggctaagaaaagttttcataattaaaaactagatattaaaaaatg |
34851856 |
T |
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| Q |
201 |
gccactatcattagtattatgcctttgttactcattttcattacacaatttcgatttttccaggttccctttattactaaatcagtgaggcatggtatta |
300 |
Q |
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| T |
34851857 |
gccactatcattagtattatgtctttgttactcattttcattacacaatttcgatttttccaggttccctttattactaaatcagtgaggcatggtatta |
34851956 |
T |
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| Q |
301 |
aaatttagcatcctgcaggtacatattccttctccttcatcttccatgaccaaact |
356 |
Q |
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| T |
34851957 |
aaatttagcatcctgcaggtacagattccttctccttcatcttccatgaccaaact |
34852012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 3651239 - 3651160
Alignment:
| Q |
47 |
gttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggta |
126 |
Q |
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| T |
3651239 |
gttcaagaaatatacgaataatggtgatctcaatggtaacaattcaaacagcgcttcaagaggcgactggtggcaaggta |
3651160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 3512532 - 3512626
Alignment:
| Q |
35 |
ttcacttttgcagttcaagaaagataagaatcatggtgatcacaatggtaacaattccagcagtgcttcaagaggggactggtgggaaggtagga |
129 |
Q |
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| T |
3512532 |
ttcacctttgtagtttaagaaagatacggataatgctgatctcaattgtaacaatcctaacagtgcttcaaggggagactggtggctaggtagga |
3512626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 318
Target Start/End: Original strand, 3512770 - 3512828
Alignment:
| Q |
260 |
ccaggttccctttattactaaatcagtgaggcatggtattaaaatttagcatcctgcag |
318 |
Q |
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| T |
3512770 |
ccaggttccctttattactaaatcactgaaacatggtgttaagagttagcattctgcag |
3512828 |
T |
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