View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264_low_82 (Length: 362)
Name: NF9264_low_82
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_82 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 36568095 - 36568442
Alignment:
| Q |
15 |
acctttttccactatcatcatcatatttcctcttcttcaccaccttctcctcctctaagagaagaactacctcttttaaacctaattccaacaaaacaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36568095 |
acctttttccactatcatcatcatatttcctcttcttcaccaccttctcctcctctaagagaagaactacctcttttaaacctaattccaacaaaacaag |
36568194 |
T |
|
| Q |
115 |
aaaaatatgatgaagatcaacaagaacatgaggtggatattcaagaccttccttgcactgccatggatttagaagaaagggaagaagatggtagtagtag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36568195 |
aaaaatatgatgaagatcaacaagaacatgaggtggatattcaagaccttccttgcactgccatggatttagaagaaagggaagaagatggtagtagtag |
36568294 |
T |
|
| Q |
215 |
aactactactgttactgttgcacttcacataggtttgccaaaccctagtgctgctgaaatggcttctgtactttcttcctctaataactcctcagagatc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36568295 |
aactactactgttactgttgcacttcacataggtttgccaaaccctagtgctgctgaaatggcttctgtactttcttcctctaataactcctcagagatc |
36568394 |
T |
|
| Q |
315 |
attgtcactgataaagaacatggtggtgaggattcttgttcaggattc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36568395 |
attgtcactgataaagaacatggtggtgaggattcttgttcaggattc |
36568442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University