View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_86 (Length: 353)
Name: NF9264_low_86
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_86 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 14880387 - 14880047
Alignment:
| Q |
13 |
catcatcaaggcaagtatgtgatcttcttctacatgtatccaagaacaaaaaagtggagtttgacaagatgaagatggattcgtacaactgaaattattt |
112 |
Q |
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| T |
14880387 |
catcatcaaggcaagtatgtgatcttcttctacatgtatcctagaacaaaaaagtggagtttgacaagatgaagatggattcgtacaactgaaattattt |
14880288 |
T |
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| Q |
113 |
ctcctttggattgatgaaaaagtggctttaaataacattgatttttactggcttttgtttaatgtttctgttcttgattttatttagttattgtagtatt |
212 |
Q |
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| T |
14880287 |
ctcctttggattgatgagaaagtggctttaaataacattgatttttactggcttttgtttaatgtttctgttcttgattttatttagttattgtagtatt |
14880188 |
T |
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| Q |
213 |
tcaatttatatgtcattccaatactacttgaatatggaggtttatgaatataaaggttatatgatattgcatattttccattctgttttcacctaatatt |
312 |
Q |
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| T |
14880187 |
tcaatttatatgtcattccaatactacttgaatatggagctttatgaatataaaggttatatgatattgcatattttccattctgttttcacctaatatt |
14880088 |
T |
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| Q |
313 |
catattgttgattagtatatctattcatatagttccaagca |
353 |
Q |
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| T |
14880087 |
catattgttgattagtatatctattcatatagttccaagca |
14880047 |
T |
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