View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9264_low_90 (Length: 349)
Name: NF9264_low_90
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_90 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 34113247 - 34112898
Alignment:
| Q |
1 |
aaaacaaaaacgtacaaaaacattatactaccagtctcaaacaaagttgaaacttacaatcatcaataaaaattgnnnnnnnattagaattacacaccac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34113247 |
aaaacaaaaaagtacaaaaacattatactaccagtctcaaacaaagttgaaacttacaatcatcaataaaaattgtttttttattagaattacacaccac |
34113148 |
T |
|
| Q |
101 |
aagcttcaaagtttcactcaattttcacattatgggcttatttgaacttatctaatggcatacattttgtgacactgtagatagaacttttgaaaacaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34113147 |
aagcttcaaagtttcactcaattttcacattatgggcttatttgaacttatctaatggcatacattttgtgacactgtagatagaacttttgaaaacaga |
34113048 |
T |
|
| Q |
201 |
ttataacattgttcataagcaatatgggcctgtttggactaacttatttgagctaagaacttataa-aaaacagcttataacaatgcttataagcagttt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34113047 |
ttataacattgttcataagcaatatgggcctgtttggactaacttatttgagctaagaacttataaaaaaacagcttataacaatgcttataagcagttt |
34112948 |
T |
|
| Q |
300 |
tcagcttattttcaaatatttctcaaatagtctatgcataatttaacttt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34112947 |
tcagcttattttcaaatatttctcaaatagtctatgcataatttaacttt |
34112898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 42100455 - 42100371
Alignment:
| Q |
132 |
atgggcttatttgaacttatctaatggcatacattttgtgacactgt-agatagaacttttgaaaacagattataacattgttca |
215 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| |||||||| ||||| || ||||||| |||||| || |||| |||| ||||| |
|
|
| T |
42100455 |
atgggcttatttgagcttatctattggcataaattttgtgtgactgtgtgagagaacttgtgaaaatagcttatgacatagttca |
42100371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 7928227 - 7928313
Alignment:
| Q |
135 |
ggcttatttgaacttatctaatggcatacattttgtgacactgt-agatagaacttttgaaaacagattat-aacattgttcataag |
219 |
Q |
| |
|
||||||||||| |||||||| || |||| || ||||| ||||| ||| ||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
7928227 |
ggcttatttgagcttatctattgacataagttgtgtgagactgttagaaagaacttttgaaaacagcttatggacattgttcataag |
7928313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University