View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9264_low_93 (Length: 344)
Name: NF9264_low_93
Description: NF9264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9264_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 33398658 - 33398417
Alignment:
| Q |
12 |
aagcagagaatgaaaaattaaatactaataatgcataactaaaagtttctcttcttttcaatgtatttgtgaaaaagataatataaaccaaattgcaaag |
111 |
Q |
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| T |
33398658 |
aagcaaagaatgaaaaattaaatactaataatgcataactaaaagtttctcttcttttcaatgtatttgtgaaaaagataatataaaccaaattgcaaag |
33398559 |
T |
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| Q |
112 |
tcagaaaatat--tttatgtctgtatcaagtgcaatgatattgtttatgaatgttctatgcattcggagcaagcatggattgatgaaattaaaggtgata |
209 |
Q |
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| T |
33398558 |
tcagaaaatatattttatgtctatatcaagtgcaatgatattgtttatgaatgttctatgcattcggagcaagcatggattgatgaaattaaaggtcata |
33398459 |
T |
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| Q |
210 |
caattgacgaaattgaagactttcaaatcacaccttcaagaa |
251 |
Q |
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| T |
33398458 |
caattgacgaaattgaagactttcaaatcacaccttcaagaa |
33398417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 33398416 - 33398368
Alignment:
| Q |
277 |
ctattaagaattcacatgattaaatcttaagctcataagtatcacatcc |
325 |
Q |
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| T |
33398416 |
ctattaagaattcacatgattaaatcttaagctcataagcatcacatcc |
33398368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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