View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_high_1 (Length: 749)
Name: NF9265_high_1
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Original strand, 21483996 - 21484600
Alignment:
| Q |
1 |
atactcatttcatcacttacaccatcacatgcacctaattcatctccttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttat |
100 |
Q |
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| T |
21483996 |
atactcatttcatcacttacaccatcacatgcacctaattcatctccttgaatactctcttccccatttacaccgtcacacacaaaaacatcgtcgttat |
21484095 |
T |
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| Q |
101 |
tctcctcgatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgt---------tgatatccgtcttgcacttgaacttg |
191 |
Q |
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| T |
21484096 |
tctcctcgatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgatgttgttgatatccgtcttgcacttgaacttg |
21484195 |
T |
|
| Q |
192 |
ttgctcttgtgtgaaatccactaaagggttttcatcttcattttgaaaaatcgaagcagggtcaaaaaattcattagcttctaaaagctccatgtaacca |
291 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21484196 |
ttgctcttgagtgaaatccactaaagggttttcatcttcattttgaaaaatcgaagcagggtcaaaaaattcattagcttctaaaagctccatgtaacca |
21484295 |
T |
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| Q |
292 |
aaagtatccataatgttaacatcatccatgcaatcaccaccaccaacaacaacatcattgttagaaacaccaagatcttgttgctgttgctgagaaatct |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21484296 |
aaagtatccataatgttaacatcatccatgcaatcaccaccaccaacaacaacatcattgttagaaacaccaagatcttgttgctgttgttgagaaatct |
21484395 |
T |
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| Q |
392 |
ccatagaagcagttgatgacaaagttgttggaggatgaccatgatgataatctaatggatgaccatgtttttgatgataaccttgatgatctacttcaac |
491 |
Q |
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| T |
21484396 |
ccatagaagcagttgatgacaaagttgttggaggatgaccatgatgataatctaatggatgaccatgtttt---tgataaccttgatgatctacttcaac |
21484492 |
T |
|
| Q |
492 |
atctgatttcaaaacagcccaagaagctgcagatgaagaagaagctgaggaagaagaagaggtagtagttgttgtagttgaagtacatgcaatggttttc |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21484493 |
atctgatttcaaaacagcccaagaagctgcagatgaagaagaagctgaggaagaagaagaggtagtagttgttgtagttgaagtacatgcaatggttttc |
21484592 |
T |
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| Q |
592 |
aatggtgt |
599 |
Q |
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| T |
21484593 |
aatggtgt |
21484600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 630 - 736
Target Start/End: Original strand, 21484631 - 21484737
Alignment:
| Q |
630 |
catgcatggaaaatcaggtaaaggtggaaaatcagcatagaacatagatgcatcatcattcatattcatacctaaaagatcaccatcttgatcatttgta |
729 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21484631 |
catgcatggaaaatcaggtaaaggaggaaaatcagcatagaacatagatgcatcatcattcatattcatacctaaaagatcaccatcttgatcatttgta |
21484730 |
T |
|
| Q |
730 |
gtattat |
736 |
Q |
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||||||| |
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| T |
21484731 |
gtattat |
21484737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 26551516 - 26551591
Alignment:
| Q |
94 |
tcgttattctcctcgatattcacttgttgcggtttattttcccgatcatcatgcactatcatcggaacttgttgat |
169 |
Q |
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|||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| | || |||||||| |
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| T |
26551516 |
tcgttattttcctcaatattcacttgttgtggtttattttccctttcatcatgcactatcattgaaatttgttgat |
26551591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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