View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_high_10 (Length: 449)
Name: NF9265_high_10
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 436
Target Start/End: Original strand, 52183283 - 52183702
Alignment:
| Q |
17 |
agataaagacttctatgacgttagtttggtggatggttacaatgtcgggatagggatacaagcaaccagaggaacaggtgattgtcagtatgcaggttgt |
116 |
Q |
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| T |
52183283 |
agataaagacttctatgacgttagtttggtggatggttacaatgtcgggatagggatacaagcaaccagaggaacaggtgattgtcagtatgcaggttgt |
52183382 |
T |
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| Q |
117 |
gttgcagatttgaaaagtcattgtccagcggagttgcaggtaacagaggtagggggttcggtggtggcctgtaagagtgcgtgtgcagcgtttaaaaccg |
216 |
Q |
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| T |
52183383 |
gttgcggatttgaacagtcattgtccagcggagttgcaggtaacagaggtagggggttcggtggtggcctgtaagagtgcgtgtgcagcgtttaataccg |
52183482 |
T |
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| Q |
217 |
aggaattttgttgcaccggtgaacattcgagtccacagagttgcagtccaacacagtactcagagatgttcaagtctgcgtgtccctctgcgtacagtta |
316 |
Q |
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| T |
52183483 |
aggaattttgttgtaccggtgaacattcgagtccacagagttgcagttcaacacagtactcagagatgttcaagtctgcgtgtccctctgcgtacagtta |
52183582 |
T |
|
| Q |
317 |
tgcttatgatgatgcttcaagcacttgcacatgttctggatccgattatcatatcactttttgtccaactgcttcctcctagccataccacattcaacaa |
416 |
Q |
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| T |
52183583 |
tgcttatgatgatgcttcaagcacttgcacatgttctgaatccgattatcatatcactttttgtccaactgcttcctcctagccttaccacattcaacaa |
52183682 |
T |
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| Q |
417 |
tgacttttgttttctctgat |
436 |
Q |
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| T |
52183683 |
tgacttttgttttctctgat |
52183702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 379
Target Start/End: Original strand, 6679300 - 6679375
Alignment:
| Q |
304 |
ctgcgtacagttatgcttatgatgatgcttcaagcacttgcacatgttctggatccgattatcatatcactttttg |
379 |
Q |
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| T |
6679300 |
ctgcttacagttatgcttatgatgatgcttctagcacttgcacatgttctggttccgattaccatatcacgttttg |
6679375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 6679167 - 6679231
Alignment:
| Q |
171 |
ggttcggtggtggcctgtaagagtgcgtgtgcagcgtttaaaaccgaggaattttgttgcaccgg |
235 |
Q |
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| T |
6679167 |
ggttcggtggtggcttgtaagagcgcgtgtttggcgttcaatatggaggaattttgttgcaccgg |
6679231 |
T |
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