View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_high_13 (Length: 420)
Name: NF9265_high_13
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_high_13 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0530 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 50420907 - 50421141
Alignment:
| Q |
1 |
attcacattcatggaagtgataaatgaaaaagtatcgttcacgaaaatattagctcaacctaagcatattgatctcaaggagtacacatccgtaatagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50420907 |
attcacattcatggaagtgataaatgaaaaagtatcgttcacgaaaatattagctcaacctaagcatattgatctcaaggagtacacatccgtaatagac |
50421006 |
T |
|
| Q |
101 |
atatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttggccaactaattgggttataata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50421007 |
atatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttggccaactaattgggttataata |
50421106 |
T |
|
| Q |
201 |
tatttccttaaaaattacaatgcattgtaagaagc |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
50421107 |
tatttccttaaaaattacaatgcattgtaagaagc |
50421141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 50421207 - 50421308
Alignment:
| Q |
301 |
gcatgaatattcctcctatattctttttgagttaacaatttgagaaaaagagtgactagaacttgagtcatcaagctcgatacctaaaatctcttcctta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50421207 |
gcatgaatattcctcctatattctttttgagttaacaatttgagaaaaagagtgactagaacttgagtcatcaagctcgatacctaaaatctcttcctta |
50421306 |
T |
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| Q |
401 |
at |
402 |
Q |
| |
|
|| |
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|
| T |
50421307 |
at |
50421308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 18146010 - 18145914
Alignment:
| Q |
79 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttac |
175 |
Q |
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| T |
18146010 |
ggagtacacatccataatagacatatcgaaattattgtgcgtcaaataacatccaaagtcttggtttcagaagatggaatgtctaatgtatttttac |
18145914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 25631464 - 25631347
Alignment:
| Q |
79 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttg |
178 |
Q |
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|
||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| || |||||| || ||| || ||| ||||||||||||| || |
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| T |
25631464 |
ggagtacacatccataatagacatatcgaaattattgtgcgtcaaataacatccaaagtattggtttcagaagatggaatgtctaatgtatttttacctg |
25631365 |
T |
|
| Q |
179 |
gccaactaattgggttat |
196 |
Q |
| |
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| || ||||||| |||| |
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| T |
25631364 |
gtgaattaattggattat |
25631347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 48191225 - 48191108
Alignment:
| Q |
79 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttg |
178 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||| || ||| || ||| || || ||||||||||||| || |
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| T |
48191225 |
ggagtacacatccataatagacatatcgaaattattgtgcgtcaaatgacatccaaagtcttggtctcagaagatggaatgtttaatgtatttttacctg |
48191126 |
T |
|
| Q |
179 |
gccaactaattgggttat |
196 |
Q |
| |
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| || ||||||| |||| |
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| T |
48191125 |
gtgaattaattggattat |
48191108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 229237 - 229330
Alignment:
| Q |
79 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttt |
172 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| || ||| || ||| ||||| |||| |
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| T |
229237 |
ggagtacacatccataatagacatatcgaaattattgtgcgtcaaataacatccaaagtcttggtttcagaagatggaatgtctaatgtttttt |
229330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 43173940 - 43174057
Alignment:
| Q |
79 |
ggagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttttacttg |
178 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| | || | || ||| || ||| ||||||||||||| || |
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| T |
43173940 |
ggagtacacatccataatagacataacaaaattattgtgcgtcaaataacatccaaagtcttggctttagaagatggaatgtctaatgtatttttacctg |
43174039 |
T |
|
| Q |
179 |
gccaactaattgggttat |
196 |
Q |
| |
|
| || ||||||| |||| |
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| T |
43174040 |
gtgaattaattggattat |
43174057 |
T |
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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 45212509 - 45212568
Alignment:
| Q |
81 |
agtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctt |
140 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45212509 |
agtacacatccataatagacatatcaaaattattgtgcgtcaaataacatccaaagtctt |
45212568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0530 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0530
Description:
Target: scaffold0530; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 3981 - 4073
Alignment:
| Q |
80 |
gagtacacatccgtaatagacatatcaaaattatcatgcgtcaaataacatccaaagtctttgtttcaaaaaatgaaacgtcgaatgtatttt |
172 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||| || ||| || ||| |||||||||| |
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| T |
3981 |
gagtacacatccataatagacaaatcgaaattattgtgcgtcaaataacatccaaagtcttgatttcagaagatggaatgtctaatgtatttt |
4073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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