View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9265_high_2 (Length: 658)

Name: NF9265_high_2
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9265_high_2
NF9265_high_2
[»] chr1 (1 HSPs)
chr1 (20-646)||(34670052-34670677)


Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 20 - 646
Target Start/End: Complemental strand, 34670677 - 34670052
Alignment:
Q  20 atcacaaaggttgaatgaagaannnnnnnggaagttggaaacttagaatcacatgtagatgaaatattataagtcagttgaggtttcatttacctttcca 119  Q
    |||||||||||| |||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670677 atcacaaaggtttaatgaagaatttttttggaa-ttggaaacttagaatcacatgtagatgaaatattataagtcagttgaggtttcatttacctttcca 34670579  T
Q  120 ccatgagggatgatgccacgcaactctttaagacagtcttggatctgctgccgatcttttggtcgtggccgagtgctctcccccggcttagccttcttct 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670578 ccatgagggatgatgccacgcaactctttaagacagtcttgaatctgctgccgatcttttggtcgtggccgagtgctctcccccggcttagccttcttct 34670479  T
Q  220 tgttgggctttgcgggctcgtccagttttctagggtgtaccggaacagccctcttaaggttgatgctatttctatcattaaccaacatacctacttgtaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670478 tgttgggctttgcgggctcgtccagttttctagggtgtaccggaacagccctcttaaggttgatgctatttctatcattaaccaacatacctacttgtaa 34670379  T
Q  320 ttttgggagtgtatctttccttgttataacactattggacttgtccaagtcagaaacagaatgcatcaagtttggtctagtttcagttccatcaaggttt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670378 ttttgggagtgtatctttccttgttataacactattggacttgtccaagtcagaaacagaatgcatcaagtttggtctagtttcagttccatcaaggttt 34670279  T
Q  420 gcaaaatgtacttgagtttgattcaagggagaaagttctaccatctgctttttattagatgataacagctcattttcaaaattagaactattaaaaggat 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670278 gcaaaatgtacttgagtttgattcaagggagaaagttctaccatctgctttttattagatgataacagctcattttcaaaattagaactattaaaaggat 34670179  T
Q  520 tgttgtaaattgcttcacctctcaaaagttcttcaattcctaactctgagaataacctcttccgagtattattagtcggtgtaccggtattcaactctga 619  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34670178 tgttgtaaattgcttcacctctcaaaagctcttcaattcctaactctgagaataacctcttccgagtattatcagtcggtgtaccggtattcaactctga 34670079  T
Q  620 tatgcattcagaaaagccagtattatc 646  Q
    |||||||||||||||||||||||||||    
T  34670078 tatgcattcagaaaagccagtattatc 34670052  T

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