View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_high_25 (Length: 248)
Name: NF9265_high_25
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_high_25 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 9069420 - 9069648
Alignment:
| Q |
20 |
ccctcttcactgtgtatgtaagtctttgtttgttaccacgtcgtcgccgtctctttttgtccttaaaggatcaataagcataatcaatcattcctgcatc |
119 |
Q |
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| T |
9069420 |
ccctcttcactgtgtatgtaagtctttgttcattaccacgtcgtcgccgtctctttttgtccttaaaggatcaataagcataatcaatcattcctgcatc |
9069519 |
T |
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| Q |
120 |
atttttctgtgcaaattgggttcttttttgttgtgaattgaattgattttctaattgaattaannnnnnnncgtttgctactttgttgttggttaatttg |
219 |
Q |
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| T |
9069520 |
atttttctgtgcaaattgggttcttttttgttgtgaattgaattgattttctaattgaattaattttttgtcgttagctactttgttgttcggtaatttg |
9069619 |
T |
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| Q |
220 |
atgctaccgtatgaaaagtattgagtatt |
248 |
Q |
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|||| || ||||||||||| ||||||||| |
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| T |
9069620 |
atgccactgtatgaaaagttttgagtatt |
9069648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 9290693 - 9290651
Alignment:
| Q |
63 |
tcgccgtctctttttgtccttaaaggatcaataagcataatca |
105 |
Q |
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| T |
9290693 |
tcgccgtctctgtttgtccttaaaggatcaataagtataatca |
9290651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 19393318 - 19393350
Alignment:
| Q |
216 |
tttgatgctaccgtatgaaaagtattgagtatt |
248 |
Q |
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| T |
19393318 |
tttgatgctactgtatgaaaagtattgagtatt |
19393350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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