View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_high_29 (Length: 229)
Name: NF9265_high_29
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 39944977 - 39944773
Alignment:
| Q |
8 |
tttggagttggttgaagcttgttttttctgtgcagcagatggttgtgaaatggcgttaactggttgcctttgagctgttgtatgtacagtaggttgtgaa |
107 |
Q |
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| T |
39944977 |
tttggagttggttgaagcttgttttttctgtgcagcagatggttgtgaaatggcgttaactggttgcctttgagctgttgtatgtacagtaggttgtgaa |
39944878 |
T |
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| Q |
108 |
ttgttttccattgctgtgtctgagatccaacaggtcaactttaagattctaagaagccatcaaccttagcatttgctgctctagacaagaatttcatgca |
207 |
Q |
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| T |
39944877 |
ttgttttccattgttgtgtctgagatccaacaggtcaactttaagattctaagaagccatcaaccttagcatttgctgctctagacaagaatttcataca |
39944778 |
T |
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| Q |
208 |
aatag |
212 |
Q |
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||||| |
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| T |
39944777 |
aatag |
39944773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 39957990 - 39957786
Alignment:
| Q |
8 |
tttggagttggttgaagcttgttttttctgtgcagcagatggttgtgaaatggcgttaactggttgcctttgagctgttgtatgtacagtaggttgtgaa |
107 |
Q |
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| T |
39957990 |
tttggagttggttgaagcttgttttttctgtgcagcagatggttgtgaaatggcgttaactggttgcctttgagctgttgtatgtacagtaggttgtgaa |
39957891 |
T |
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| Q |
108 |
ttgttttccattgctgtgtctgagatccaacaggtcaactttaagattctaagaagccatcaaccttagcatttgctgctctagacaagaatttcatgca |
207 |
Q |
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| T |
39957890 |
ttgttttccattgttgtgtctgagatccaacaggtcaactttaagattctaagaagccatcaaccttagcatttgctgctctagacaagaatttcataca |
39957791 |
T |
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| Q |
208 |
aatag |
212 |
Q |
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||||| |
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| T |
39957790 |
aatag |
39957786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 28748018 - 28748123
Alignment:
| Q |
107 |
attgttttccattgctgtgtctgagatccaacaggtcaactttaagattctaagaagccatcaaccttagcatttgctgctctagacaagaatttcatgc |
206 |
Q |
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|||||||||||||| | ||| |||||||||| | | |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28748018 |
attgttttccattgttttgtatgagatccaataagacaacttcaagatcctaagaaattatcaaccttagcatttgctgctctagacaagaatttcatgc |
28748117 |
T |
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| Q |
207 |
aaatag |
212 |
Q |
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|||||| |
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| T |
28748118 |
aaatag |
28748123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 28752090 - 28752136
Alignment:
| Q |
166 |
atcaaccttagcatttgctgctctagacaagaatttcatgcaaatag |
212 |
Q |
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| T |
28752090 |
atcaaccttagcatttgctgctctagacaagaatttcatgcaaatag |
28752136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 28738114 - 28738172
Alignment:
| Q |
154 |
ttctaagaagccatcaaccttagcatttgctgctctagacaagaatttcatgcaaatag |
212 |
Q |
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|||||||||| ||||||| ||||||||| |||| |||||||||||||||| ||||||| |
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| T |
28738114 |
ttctaagaaggcatcaactttagcattttttgctttagacaagaatttcatacaaatag |
28738172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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