View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_12 (Length: 587)
Name: NF9265_low_12
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 47710728 - 47711310
Alignment:
| Q |
1 |
ttccattcgattttgctgagttcaactgtaaataagcttgataatcaaacaaagcaatcaagcatatgtcacacaatatttctaaattgcggttcgagac |
100 |
Q |
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| T |
47710728 |
ttccattcgattttgctgagttcaactgtaaataagcttgataatcaaacaaagcaatcaagcatatgtcacacaatatttctaaattgcggttcgagac |
47710827 |
T |
|
| Q |
101 |
tgaaattgcagccataatataaaaggttttagaggtttccacagcagcattgtaaccgcaaccgtgcccgtatcggttgctgtattttgctgcaatatca |
200 |
Q |
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| T |
47710828 |
tgaaactgcagccataatataaaaggttttagaggtttccgcagcagcattgtaaccgcaaccgtgtccgtatcggttgctgtattttgctgcaatatca |
47710927 |
T |
|
| Q |
201 |
aattttgcagcataaccacaaccgcaatttagcaccaaaaagtagtatcttactgtcattaacatccagagggctaacaaaaatccacaaaatgatatag |
300 |
Q |
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| T |
47710928 |
aattttgcagcataaccacaaccgcaatttagcaccaaaaagtagtatcttactgtcattaacatccagagggctaacaaaaatccacaaaatgatatag |
47711027 |
T |
|
| Q |
301 |
aacatgtgagtacagaatacagataaatctatatgcatgctctctgcccaagtatgcatgatcaagccaaataagtttacgattataatagaaaacaatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
47711028 |
aacatgtgagtacagaatacagataaatctatatgcatgctctctgcccaagtatgcatgatcaagccaaataagtttacgactgaaatagaaaacaatc |
47711127 |
T |
|
| Q |
401 |
aaaacaacagaatattgttgccaactgtagcatagcaacaacagtggcaacaatattatttcaattgcagcaacaccatggcatcaactaccaagtaaac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47711128 |
aaaacaacagaatattgttgccaactgtagcatagcaacaacagtggcaacaatattatttcaattgcagcaacaccatggcattaactaccaagtaaac |
47711227 |
T |
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| Q |
501 |
atctgaaattaattatgcaactaaacaca--------------ataaatggtacattagtattagatgttccatagggtcaaa |
569 |
Q |
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| T |
47711228 |
atctgaaattaattatgcaactaaacacaataaatgtgtcacaataaatggtacattagtattagatgttccatagggtcaaa |
47711310 |
T |
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