View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_14 (Length: 475)
Name: NF9265_low_14
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 11 - 461
Target Start/End: Complemental strand, 12952988 - 12952538
Alignment:
| Q |
11 |
gcagagagacgaggatgtaggcggcgcagcagtagagaaaaagaaaaagaggaaaagtaagagtagtagagggagtattgattggtggttggatggttta |
110 |
Q |
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| T |
12952988 |
gcagagagacaaggatgtaggcggcccaccattagagaagaagaaaaagaggaaaagtaagagtagtagagggagtattgattggtggttggatggttta |
12952889 |
T |
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| Q |
111 |
agcggcgagcttaggactaacgcaaggagaaatagtcaagattggggtaatggtgatataccgaagagtggtggaataagtagcacaccgagtatgagag |
210 |
Q |
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| T |
12952888 |
agcggcgagcttaggactaacggaaggagaaatagtcaagattggggtaatggtgatataccgaagagtggtggaataagtagcacaccgagtatgagag |
12952789 |
T |
|
| Q |
211 |
gaactgtttgttacattgctcctgaatacggcagtggtggtcaattatccgagaaatgtgatgtgtatagtttcggtgttctgcttttggttctggttgc |
310 |
Q |
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| T |
12952788 |
gaactgtttgttacattgctcctgaatacggtggtggtggtcaattatccgagaaatgtgatgtgtatagtttcggtgttctgcttttggttctggttgc |
12952689 |
T |
|
| Q |
311 |
tggaagaagaccattacaagtaacagcatcaccgatttcagaattcgagagagcaaatctaatttcatgggctagacaacttgctcataatggaaaactc |
410 |
Q |
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| T |
12952688 |
tggaagaagaccattacaagtaacagcatcaccgatttcagaattcgagagagcaaatctaatttcatgggctagacaacttgctcataatggaaaactc |
12952589 |
T |
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| Q |
411 |
ttggatcttgttgatagttctatacattctttggataaagaacaagcattg |
461 |
Q |
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| T |
12952588 |
ttggatcttgttgatagttctatacattctttggataaagaacaagcattg |
12952538 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 46223338 - 46223400
Alignment:
| Q |
174 |
aagagtggtggaataagtagcacaccgagtatgagaggaactgtttgttacattgctcctgaa |
236 |
Q |
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| T |
46223338 |
aagagtggtgaaattagtagtactccaagtatgagaggaactgttttttatgttgctcctgaa |
46223400 |
T |
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