View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_18 (Length: 461)
Name: NF9265_low_18
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 173 - 443
Target Start/End: Original strand, 36167366 - 36167619
Alignment:
| Q |
173 |
atgatatggggcaatgactattctagagaggaatgatgatgtgtgccatctgccatgttttgaatttctcatcacgggatttgaaagtctatatgtaact |
272 |
Q |
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| T |
36167366 |
atgatatggggcaatgactattctagagaggaatgatgatgtgtgccatctgccatgttttgaatttctcatcacgggatttgaaagtctatatttaact |
36167465 |
T |
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| Q |
273 |
aatttaaatataacacgtttatttccgaaannnnnnnaaaaaggaaaatgaaacgattatttttatatattttagtgacatgcaaccggtatggacagat |
372 |
Q |
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| T |
36167466 |
aatttaaatataacacgttta-----------------aaaaggaaaatgaaacgattatttttatatattttagtgacatgcaaccggtatggacagat |
36167548 |
T |
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| Q |
373 |
attttgagagattcaccacaaaaaagaaagatattttgagagattgagtatgatttattaggtgagggaac |
443 |
Q |
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| T |
36167549 |
attttgagagattcaccacaaaaaagaaagatattttgagagattgagcatgatttattaggtgggggaac |
36167619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 36167202 - 36167340
Alignment:
| Q |
14 |
attatactttggattcatatattcattccttccctcttgactttgaatttgaaatccatgcactttcggtaaaatgcgtatgaaaaaggctacattatac |
113 |
Q |
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| T |
36167202 |
attatactttggattcatatattcattccttccctcttgactttgaatgtgaaatccatgcactttcggtaaaatgcgtatgaaaaaggctacattatac |
36167301 |
T |
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| Q |
114 |
atttggatacctgcacgtaaactaatgcctgcatcaata |
152 |
Q |
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| T |
36167302 |
atttggatacctgcacgtaaactaatgcctgcatcaata |
36167340 |
T |
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