View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_22 (Length: 428)
Name: NF9265_low_22
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 2179294 - 2178894
Alignment:
| Q |
9 |
aagcagagagagaacgagaaattccaacgccgttggcatctcgacaaaggtggagagtagtagccacaacaaaaggggtggttgtaccaggtgacctaac |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2179294 |
aagcaaagagagaacgagaaattccaacgccgttggcatctcgacaaaggtggagagtagtagccacaacaaaaggagtggttgtaccaggtgacctaac |
2179195 |
T |
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| Q |
109 |
catcgcgacgtttgactttcataagacattagtttgttgatctacaagttctaaaatgaaagggtgctgctcatcaccattatgtgtgctatcaagacag |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2179194 |
catcgcaacgtttgactttcataagacattagtttgttgatctacaagttctaaaatgaaagggtgctgctcatcaccattatgtg--ctatcaagacag |
2179097 |
T |
|
| Q |
209 |
atgtatcaattattgaatcggtgacatttgataaaggaaagtaaaaggaggtgcttgactttgggggctgctcaatacgatccttctgaggggaatccga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2179096 |
atgtatcaattattgaatcggtgacatttgataaaggaaagtaaaaggaggtgcttgactttgggggctgctcaatacgatccttctgaggggaatccga |
2178997 |
T |
|
| Q |
309 |
ctccttcaataatttggtttgactttcagtaccttgttgcaatgatagttctgtaggcgagctatgtgtgacaacatgattggtattagggacaacacgt |
408 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2178996 |
ctccttcaataatttggtttgaatttcagtaccttgttgcaatgatagttctgtaggcgagctatgtgtgacaacatgattggtattagggacaacacgt |
2178897 |
T |
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| Q |
409 |
tct |
411 |
Q |
| |
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||| |
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| T |
2178896 |
tct |
2178894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 16469840 - 16469903
Alignment:
| Q |
225 |
atcggtgacatttgataaaggaaagtaaaaggaggtgcttgactttgggggctgctcaatacga |
288 |
Q |
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| T |
16469840 |
atcgttgacatttgataatggaaaatgaaaagaggtgcttgagtttggaggctgttcaatacga |
16469903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Complemental strand, 26993323 - 26993282
Alignment:
| Q |
133 |
gacattagtttgttgatctacaagttctaaaatgaaagggtg |
174 |
Q |
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||||||||| |||||||||||| |||| |||||||||||||| |
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| T |
26993323 |
gacattagtctgttgatctacaggttccaaaatgaaagggtg |
26993282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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