View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_25 (Length: 426)
Name: NF9265_low_25
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 200 - 409
Target Start/End: Complemental strand, 43089985 - 43089778
Alignment:
| Q |
200 |
ctattttcttgcacatgtaatttttcttacacgataagaactaaatcaatgtgtgatcaatcttctcnnnnnnnnnnnnnnnnnnnnnnntggtgtgttc |
299 |
Q |
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| T |
43089985 |
ctattttcttgcacatgtaatttttcttacacgataagaactaaatcaatgtgtgatcaatcttctcaaaaaaaaaaaaaaaaggaaaaatggtg--ttc |
43089888 |
T |
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| Q |
300 |
aaaattcaatttgcttacaactaacatcaacaatatatcagtttgtgatccagcaagaacatttcaacataacaattgagggtttgtagattgctcttgt |
399 |
Q |
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| T |
43089887 |
aaaattcaatttgcttacaactaacatcaacaatatatcagtttgtgatccagcaagaacatttcaacataacaattgagggtttgtagattgctcttgt |
43089788 |
T |
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| Q |
400 |
tgtctaatcc |
409 |
Q |
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|||||||||| |
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| T |
43089787 |
tgtctaatcc |
43089778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 43090193 - 43090060
Alignment:
| Q |
1 |
tggagagagtactcctagcatgacaactattcaatacttgttatgagcaaacaagacagtaaacaaaaccatctttacagaaccaaaatgatggagctgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
43090193 |
tggagagagtactcctagcatgacaactattcaatacttgttatgagtaaacaagacagtaaacaaaaccatctttacagaaccaaaatgatagaactgg |
43090094 |
T |
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| Q |
101 |
tcaagttagattaataggattgaataataaggca |
134 |
Q |
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|||||| ||||||||||||||| ||||||||||| |
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| T |
43090093 |
tcaagtcagattaataggattgtataataaggca |
43090060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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