View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_30 (Length: 391)
Name: NF9265_low_30
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 14042327 - 14042461
Alignment:
| Q |
17 |
gattagtcgacagttagaaaagcaatagcttgatcgcctcataaatgagcactaat--tgagaaatttgatacaagaannnnnnnaattcacaccataac |
114 |
Q |
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| T |
14042327 |
gattagttgaccgttggaaaatcaatggcttgatcgcatcataaatgagcactaatattgagaaagttgatacaagaatttttttaattcacaccataac |
14042426 |
T |
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| Q |
115 |
actccatgtgttccaatagttgttaactgtatgaa |
149 |
Q |
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| T |
14042427 |
actccatgtgttccaacagttgttaattgtatgaa |
14042461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 14038750 - 14038803
Alignment:
| Q |
262 |
tctaggacacgatggattccacccaattttcttcaaaaatcaatggaggataga |
315 |
Q |
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| T |
14038750 |
tctaggacatgatggattccacccaattttcttcaaaaatcaatgcaggataga |
14038803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 29610191 - 29610088
Alignment:
| Q |
29 |
gttagaaaagcaatagcttgatc--gcctcataaatgagcactaattgagaaatttgatacaagaannnnnnnaattcacaccataacactccatgtgtt |
126 |
Q |
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| T |
29610191 |
gttagaaaatcaataacttgatctcgcctcataaatgagcactaattgagaaagttgacatgagattttttttaattcacaccataacactccatgtgtt |
29610092 |
T |
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| Q |
127 |
ccaa |
130 |
Q |
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|||| |
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| T |
29610091 |
ccaa |
29610088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 36725370 - 36725455
Alignment:
| Q |
1 |
caaatccaatggttaagattagtcgacagttagaaaagcaatagcttgatc--gcctcataaatgagcactaattgagaaatttga |
84 |
Q |
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| T |
36725370 |
caaatccaatggctaggattaattgaccgttagaaaatcaatggcttgatctcgcatcataaatgagcactaattgagaaagttga |
36725455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 12906804 - 12906935
Alignment:
| Q |
1 |
caaatccaatggttaagattagtcgacagttagaaaagcaatagcttgatc--gcctcataaatgagcactaattgagaaatttgatacaagaannnnnn |
98 |
Q |
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| T |
12906804 |
caaatccaatggttaggattagttgaccgttagaaaatcaatggctttatcttacatcataaatgaacactaattaagaaagttgacatgataatttttt |
12906903 |
T |
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| Q |
99 |
naattcacaccataacactccatgtgttccaa |
130 |
Q |
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||| |||||||||||||| |||||||||||| |
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| T |
12906904 |
taatacacaccataacacttcatgtgttccaa |
12906935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 36726498 - 36726533
Alignment:
| Q |
100 |
aattcacaccataacactccatgtgttccaatagtt |
135 |
Q |
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| T |
36726498 |
aattcacaccataacactccatgtgttccaacagtt |
36726533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 130
Target Start/End: Complemental strand, 33379881 - 33379851
Alignment:
| Q |
100 |
aattcacaccataacactccatgtgttccaa |
130 |
Q |
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| T |
33379881 |
aattcacaccataacactccatgtgttccaa |
33379851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 55081134 - 55081049
Alignment:
| Q |
1 |
caaatccaatggttaagattagtcgacagttagaaaagcaatagcttgatcgc--ctcataaatgagcactaattgagaaatttga |
84 |
Q |
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|||||||||||| || ||||| ||| ||||||||| |||| |||| ||| | |||||||||||||||||||||||||| |||| |
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| T |
55081134 |
caaatccaatggctaggattaaatgaccgttagaaaatcaatggctttatctcacctcataaatgagcactaattgagaaagttga |
55081049 |
T |
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