View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9265_low_32 (Length: 372)

Name: NF9265_low_32
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9265_low_32
NF9265_low_32
[»] chr2 (30 HSPs)
chr2 (16-181)||(39473376-39473541)
chr2 (205-356)||(39415049-39415196)
chr2 (37-193)||(39414770-39414926)
chr2 (211-326)||(39473640-39473755)
chr2 (31-193)||(39421814-39421976)
chr2 (105-174)||(39137800-39137869)
chr2 (21-175)||(39152501-39152646)
chr2 (199-283)||(39414959-39415043)
chr2 (31-175)||(39459169-39459313)
chr2 (49-172)||(39215552-39215675)
chr2 (30-193)||(39381492-39381655)
chr2 (49-175)||(39192440-39192566)
chr2 (49-175)||(39198120-39198246)
chr2 (232-336)||(39458960-39459064)
chr2 (211-334)||(39422021-39422144)
chr2 (206-336)||(39137527-39137657)
chr2 (266-336)||(39152313-39152383)
chr2 (52-190)||(39468241-39468379)
chr2 (49-173)||(39222804-39222928)
chr2 (68-188)||(39397868-39397988)
chr2 (21-188)||(39161746-39161913)
chr2 (21-188)||(39207281-39207448)
chr2 (21-188)||(39389109-39389276)
chr2 (209-336)||(39487721-39487848)
chr2 (105-173)||(39124600-39124668)
chr2 (232-317)||(39369835-39369920)
chr2 (110-175)||(39370025-39370090)
chr2 (107-175)||(39494500-39494568)
chr2 (259-314)||(44614607-44614662)
chr2 (264-336)||(39451784-39451856)
[»] chr6 (1 HSPs)
chr6 (37-175)||(16113216-16113354)
[»] chr7 (2 HSPs)
chr7 (105-174)||(19807750-19807819)
chr7 (206-336)||(19807477-19807607)
[»] chr8 (1 HSPs)
chr8 (211-332)||(44951217-44951338)
[»] chr3 (1 HSPs)
chr3 (149-188)||(51574971-51575010)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 8e-77; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 39473376 - 39473541
Alignment:
Q  16 ggtgttccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39473376 ggtgttccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactagtactttgaact 39473475  T
Q  116 tattctcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgatttgagttcct 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||||    
T  39473476 tattctcttttgactcgagttctttccatcgttcttcaaattgcttcgctattgatttgaattcct 39473541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 205 - 356
Target Start/End: Original strand, 39415049 - 39415196
Alignment:
Q  205 cctttgaattccccctcttttgagtggaacttcttcatttgttctttgaattgattttgttttgattcaagctccttcagttggctctcgaaatgcttct 304  Q
    ||||||| |||| |||||||||| |||||||  |||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  39415049 cctttgagttcctcctcttttgactggaactctttcattcgttctttgaattgattttcttttgattcaagctccttcagttggctttcgaaatgcttct 39415148  T
Q  305 tttctgattccagctccttcactcggccttcatgcatgttgcttctcttttg 356  Q
    ||||||||||||||||||||||||| ||||    ||||||||||||||||||    
T  39415149 tttctgattccagctccttcactcgacctt----catgttgcttctcttttg 39415196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 39414770 - 39414926
Alignment:
Q  37 agctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagtt 136  Q
    ||||||||||| |||||||  |||| |||||||| ||| ||||| |||||||||||    || || | || ||||||||||||||| |||| || |||||    
T  39414770 agctttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctctttgaccagtagtttgaacttattctcatttgtcttgagtt 39414869  T
Q  137 ctttccatcgttcttcaaattgtttctcttttgatttgagttccttaacttgacctt 193  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39414870 ctttccatcgttcttcaaattgcttctcttttgatttgagttccttaacttgacctt 39414926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 39473640 - 39473755
Alignment:
Q  211 aattccccctcttttgagtggaacttcttcatttgttctttgaattgattttgttttgattcaagctccttcagttggctctcgaaatgcttcttttctg 310  Q
    |||||| |||||||||| ||||||| ||||| |||| | || ||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  39473640 aattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttcttttctg 39473739  T
Q  311 attccagctccttcac 326  Q
    ||||| ||| ||||||    
T  39473740 attccggcttcttcac 39473755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 39421814 - 39421976
Alignment:
Q  31 ttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgact 130  Q
    ||||||||||| ||||||||||||| ||||  | || |||   |||| |||||||| |||||    ||||||| ||||||||||||||||||||||||||    
T  39421814 ttatttagcttcgactcgggatccttgactagtgctccaaatcgcttgtcttttaatttgagctctttcactagtactttgaacttattctcttttgact 39421913  T
Q  131 cgagttctttccatcgttcttcaaattgtttctcttttgatttgagttccttaacttgacctt 193  Q
     ||||||||||||| ||||||||||||  ||||| ||| ||||||  ||| |||| |||||||    
T  39421914 tgagttctttccattgttcttcaaatttcttctcgtttaatttgaagtccgtaacctgacctt 39421976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 39137869 - 39137800
Alignment:
Q  105 tactttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgatttg 174  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  39137869 tactttgaacttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttttgatttg 39137800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 39152646 - 39152501
Alignment:
Q  21 tccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattc 120  Q
    |||||||||||||||||||||||||||  |||||| | ||||| |||||| |||||||||||||||||||||   ||||||       | ||  ||||||    
T  39152646 tccatcatgtttatttagctttgactcaagatccttggcttctacttcaagctgcttctcttttaacttgagctccttcac-------tgga--ttattc 39152556  T
Q  121 tcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgatttga 175  Q
    |||||||||||||| |||||||| |||| ||||||||| |||||||||| |||||    
T  39152555 tcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttga 39152501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 39414959 - 39415043
Alignment:
Q  199 acttcacctttgaattccccctcttttgagtggaacttcttcatttgttctttgaattgattttgttttgattcaagctccttca 283  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||  |||| ||||||||||| ||||||||    
T  39414959 acttgacctttgaattccccctcttttgagtggaactccttcatttgttctctgaatttcttttcttttgattcaaactccttca 39415043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 39459313 - 39459169
Alignment:
Q  31 ttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgact 130  Q
    ||||| ||||||||||| ||||||| ||||| ||||||||  ||||| ||||||||||||||    ||||||| ||||||||||||||||||||  |  |    
T  39459313 ttattaagctttgactctggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcat 39459214  T
Q  131 cgagttctttccatcgttcttcaaattgtttctcttttgatttga 175  Q
    ||| ||||||||   ||||||||||||| ||||||||| ||||||    
T  39459213 cgaattctttccgctgttcttcaaattgcttctcttttaatttga 39459169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 172
Target Start/End: Complemental strand, 39215675 - 39215552
Alignment:
Q  49 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgtt 148  Q
    ||||||| ||||| |||| ||| ||||||||||||||||||||    ||| ||   |||||||||||||||||||||| |||| ||||||||||| |||     
T  39215675 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 39215576  T
Q  149 cttcaaattgtttctcttttgatt 172  Q
    |||||||||| |||||||||||||    
T  39215575 cttcaaattgcttctcttttgatt 39215552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 39381492 - 39381655
Alignment:
Q  30 tttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgac 129  Q
    ||||||||||||||| || ||||||| | ||| || ||||| |||||||||||||||||||||    ||||   |||||||||||| ||||||||||||     
T  39381492 tttatttagctttgaatcaggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactcattctcttttgat 39381591  T
Q  130 tcgagttctttccatcgttcttcaaattgtttctcttttgatttgagttccttaacttgacctt 193  Q
    ||| ||||||||  ||||||||||||||  ||||  ||||| | ||  ||||||||||||||||    
T  39381592 tcgtgttctttcattcgttcttcaaatttcttcttctttgactcgaactccttaacttgacctt 39381655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 39192440 - 39192566
Alignment:
Q  49 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgtt 148  Q
    ||||||| ||||  |||||||| |||||| |||||||| |||||   ||||||  || ||||||||||||||||||||||||| |||||  ||||||||     
T  39192440 ggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtc 39192539  T
Q  149 cttcaaattgtttctcttttgatttga 175  Q
    |||| ||||| ||||||||||||||||    
T  39192540 cttctaattgcttctcttttgatttga 39192566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 39198120 - 39198246
Alignment:
Q  49 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgtt 148  Q
    ||||||| ||||  |||||||| |||||| |||||||| |||||   ||||||  || ||||||||||||||||||||||||| |||||  ||||||||     
T  39198120 ggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgtc 39198219  T
Q  149 cttcaaattgtttctcttttgatttga 175  Q
    |||| ||||| ||||||||||||||||    
T  39198220 cttctaattgcttctcttttgatttga 39198246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 336
Target Start/End: Complemental strand, 39459064 - 39458960
Alignment:
Q  232 aacttcttcatttgttctttgaattgattttgttttgattcaagctccttcagttggctctcgaaatgcttcttttctgattccagctccttcactcggc 331  Q
    |||| ||||| |||| |||  ||||| |||| ||||||||| |||||||||||   ||||||||||||||||||||||||||||| ||||||||| ||||    
T  39459064 aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc 39458965  T
Q  332 cttca 336  Q
    |||||    
T  39458964 cttca 39458960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 334
Target Start/End: Original strand, 39422021 - 39422144
Alignment:
Q  211 aattccccctcttttgagtggaacttcttcatttgttctttgaattgattttgttttgattcaagctccttcagttggctctcgaaatgcttcttttctg 310  Q
    |||||| ||||||||||  |||||| |||||||||| | | |||||  |||| | ||||||| || ||||||||| |||| || ||||||||||||||||    
T  39422021 aattcctcctcttttgacaggaactccttcatttgtccatcgaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttcttttctg 39422120  T
Q  311 attccagctccttcactcggcctt 334  Q
    ||||||||| || |||||||||||    
T  39422121 attccagcttctccactcggcctt 39422144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 336
Target Start/End: Complemental strand, 39137657 - 39137527
Alignment:
Q  206 ctttgaattccccctcttttgagtggaacttcttcatttgttctttgaattgattttgttttgattcaagctccttcagttggctctcgaaatgcttctt 305  Q
    ||||||||||| | |||||||| ||||||| ||||||||||||||   |||| |||| || || |||||||| |||| || ||||||| |||||||||||    
T  39137657 ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcaagctgcttctgtcggctctcaaaatgcttctt 39137558  T
Q  306 ttctgattccagctccttcactcggccttca 336  Q
    ||| ||||| || |||||||| | |||||||    
T  39137557 ttcagattcgagttccttcaccctgccttca 39137527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 39152383 - 39152313
Alignment:
Q  266 ttgattcaagctccttcagttggctctcgaaatgcttcttttctgattccagctccttcactcggccttca 336  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  39152383 ttgattcgagctccttcagtcggctctcgaaatgcttcttttctgattccagcttcttcacctggccttca 39152313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 39468379 - 39468241
Alignment:
Q  52 tcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgttctt 151  Q
    |||| ||||| |||||||| ||||||||||||||||||||    ||||||  |||||||||||  ||||||||||||||  | |||||| || ||||| |    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcat 39468280  T
Q  152 caaattgtttctcttttgatttgagttccttaacttgac 190  Q
    ||||||| || |||||||||||||  |||| ||||||||    
T  39468279 caaattgcttatcttttgatttgaaatcctcaacttgac 39468241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 173
Target Start/End: Complemental strand, 39222928 - 39222804
Alignment:
Q  49 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgtt 148  Q
    ||||||| ||||| |||||||| |  ||| ||||| || |||||   ||||||  || |||||||||||||||||| |||||| ||||  ||||||||||    
T  39222928 ggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgtt 39222829  T
Q  149 cttcaaattgtttctcttttgattt 173  Q
    |||||||||| ||||||||||||||    
T  39222828 cttcaaattgcttctcttttgattt 39222804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 188
Target Start/End: Original strand, 39397868 - 39397988
Alignment:
Q  68 caacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgtttctcttt 167  Q
    |||||||||||||||||||||  ||   || |||  |||||||||||| ||||||||||||||| |||| |||||| |||||||||| ||| || |||||    
T  39397868 caacctgcttctcttttaactcaagctcctgcacctttactttgaactgattctcttttgactcaagttttttccaccgttcttcaatttgcttatcttt 39397967  T
Q  168 tgatttgagttccttaacttg 188  Q
    ||||||||  |||| ||||||    
T  39397968 tgatttgaaatcctcaacttg 39397988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 39161913 - 39161746
Alignment:
Q  21 tccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattc 120  Q
    |||||||  |||||| | ||||||||  ||||||| ||||| ||||||||  ||||| |||||||| |||||   |||| |  ||||||||| ||||| |    
T  39161913 tccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatac 39161814  T
Q  121 tcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgatttgagttccttaacttg 188  Q
    ||||| | ||| ||||| ||||| ||| ||||||||||||||| |||||||||||  |||| ||||||    
T  39161813 tctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttg 39161746  T

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Target: chr2; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 39207281 - 39207448
Alignment:
Q  21 tccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattc 120  Q
    |||||||  |||||| | ||||||||  ||||||| ||||| ||||||||  ||||| |||||||| |||||   |||| |  ||||||||| ||||| |    
T  39207281 tccatcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatac 39207380  T
Q  121 tcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgatttgagttccttaacttg 188  Q
    ||||| | ||| ||||| ||||| ||| ||||||||||||||| |||||||||||  |||| ||||||    
T  39207381 tctttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttg 39207448  T

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Target: chr2; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 39389109 - 39389276
Alignment:
Q  21 tccatcatgtttatttagctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattc 120  Q
    |||||||  |||||| ||||||||||| ||||| | |||||  ||||||| |||||| |||||||| |||||   ||||||  ||||||||||||||| |    
T  39389109 tccatcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatac 39389208  T
Q  121 tcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgatttgagttccttaacttg 188  Q
    |||||  |||| ||||| |||||||||  || |||| | | ||||||||||||||  |||| ||||||    
T  39389209 tctttcaactccagttcgttccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaacttg 39389276  T

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Target: chr2; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 39487721 - 39487848
Alignment:
Q  209 tgaattccccctcttttgagtggaacttcttcatttgttctttgaattgattttgttttgattcaagctccttcagttggctctcgaaatgcttcttttc 308  Q
    |||||||| |||||||||| ||||||| ||||||||||||||    ||| |||| || || ||| ||||||||| || |||||||  |||||||||||||    
T  39487721 tgaattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttcttgtgcttcgagctccttctgtcggctctcagaatgcttcttttc 39487820  T
Q  309 tgattccagctccttcactcggccttca 336  Q
     |||||  |||||||||| |||||||||    
T  39487821 agattcgggctccttcacccggccttca 39487848  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 39124668 - 39124600
Alignment:
Q  105 tactttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgattt 173  Q
    |||||||||||  ||||||| ||||||||| |||||||||||| |||| |||||||||| || ||||||    
T  39124668 tactttgaactccttctcttctgactcgagctctttccatcgtccttctaattgtttctgttctgattt 39124600  T

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Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 317
Target Start/End: Complemental strand, 39369920 - 39369835
Alignment:
Q  232 aacttcttcatttgttctttgaattgattttgttttgattcaagctccttcagttggctctcgaaatgcttcttttctgattccag 317  Q
    |||| |||| ||||| |||  ||||| |||| ||||||||| ||||||| ||||  |||||||| |||||||||||| ||||||||    
T  39369920 aactccttcttttgtccttcaaattgcttttcttttgattcgagctcctgcagtctgctctcgatatgcttcttttccgattccag 39369835  T

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Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 39370090 - 39370025
Alignment:
Q  110 tgaacttattctcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgatttga 175  Q
    ||||||| ||||||||| |||| ||||||||||| ||| |||||||||| || ||||| |||||||    
T  39370090 tgaacttgttctcttttaactcaagttctttccaccgtccttcaaattgcttttctttcgatttga 39370025  T

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Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 39494500 - 39494568
Alignment:
Q  107 ctttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgatttga 175  Q
    |||||||||| || |||||||||||  | ||||||| |||| ||||||||||||||||||  |||||||    
T  39494500 ctttgaacttcttgtcttttgactctggctctttccctcgtccttcaaattgtttctcttccgatttga 39494568  T

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Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 44614662 - 44614607
Alignment:
Q  259 ttttgttttgattcaagctccttcagttggctctcgaaatgcttcttttctgattc 314  Q
    |||| |||||||||||  |||||  || ||||||||||||||||||||||||||||    
T  44614662 ttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattc 44614607  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 336
Target Start/End: Complemental strand, 39451856 - 39451784
Alignment:
Q  264 ttttgattcaagctccttcagttggctctcgaaatgcttcttttctgattccagctccttcactcggccttca 336  Q
    ||||||||  ||||||| || |||||| || |||||||||||||  |||||||| |||||||||  |||||||    
T  39451856 ttttgatttgagctcctccacttggctttcaaaatgcttctttttagattccagatccttcactttgccttca 39451784  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 16113354 - 16113216
Alignment:
Q  37 agctttgactcgggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactattactttgaacttattctcttttgactcgagtt 136  Q
    |||||||||||  | |||| ||||| | |||||| |||||||||||||||||||||   |||| |  |||||||||||| |||||||||||| |||||||    
T  16113354 agctttgactcaagctccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctcttttgattcgagtt 16113255  T
Q  137 ctttccatcgttcttcaaattgtttctcttttgatttga 175  Q
    ||||||| |||||||||||||| || || ||||||||||    
T  16113254 ctttccaccgttcttcaaattgcttatcgtttgatttga 16113216  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 19807819 - 19807750
Alignment:
Q  105 tactttgaacttattctcttttgactcgagttctttccatcgttcttcaaattgtttctcttttgatttg 174  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||    
T  19807819 tactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttttgatttg 19807750  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 206 - 336
Target Start/End: Complemental strand, 19807607 - 19807477
Alignment:
Q  206 ctttgaattccccctcttttgagtggaacttcttcatttgttctttgaattgattttgttttgattcaagctccttcagttggctctcgaaatgcttctt 305  Q
    ||||||||||| | |||||||| ||||||| ||||||||||||||   |||| |||| || || ||| |||  |||| || |||||||||||||||||||    
T  19807607 ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcgagccgcttctgtcggctctcgaaatgcttctt 19807508  T
Q  306 ttctgattccagctccttcactcggccttca 336  Q
    ||| ||||| ||||||||| | |||||||||    
T  19807507 ttcagattcgagctccttcgcccggccttca 19807477  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 332
Target Start/End: Original strand, 44951217 - 44951338
Alignment:
Q  211 aattccccctcttttgagtggaacttcttcatttgttctttgaattgattttgttttgattcaagctccttcagttggctctcgaaatgcttcttttctg 310  Q
    |||||| |||||||||| || |||| ||||  |||||||||||||| ||||| | ||||||||| |||||||| | || ||||||||||    ||||| |    
T  44951217 aattcctcctcttttgactgaaactccttctcttgttctttgaatttattttctcttgattcaaactccttcattcggatctcgaaatgtgctttttcag 44951316  T
Q  311 attccagctccttcactcggcc 332  Q
    |||| | |||||| ||||||||    
T  44951317 attcaaactcctttactcggcc 44951338  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 51575010 - 51574971
Alignment:
Q  149 cttcaaattgtttctcttttgatttgagttccttaacttg 188  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  51575010 cttcaaattgtttctcttttgatttgagttccttcacttg 51574971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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