View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9265_low_34 (Length: 356)
Name: NF9265_low_34
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 51 - 346
Target Start/End: Complemental strand, 2528885 - 2528591
Alignment:
| Q |
51 |
acaaattcttacctctgctataaagtatagcattgactgtattgatgaacgaaaaatatttttccatagtcaagacttatatttttcaactgtatggatg |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2528885 |
acaaattcttacctctgctataaagtatagcattgattgtattgatgaacgaaaaatatttttccatagtcaagacttatatttttcaactgtattgatg |
2528786 |
T |
|
| Q |
151 |
aaagaaaaatatatttccatcaagacttatatttttcaacaaatattttaaaaatatattgtaaaaaagttcatgaaaaatgtctttctaatttttattg |
250 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2528785 |
aaagaaaaatatttttccatcaagacttatatttttcaacaaatattttaaaaatatattgtaaaaaagttcatgaaaaatgtctttctaatttttattg |
2528686 |
T |
|
| Q |
251 |
tcaaaatatatagacttatgtttaaaaaagacttcaactcttcgtcggatcaaatttgtccttcgtcggtaattgattgcataacaaacaccaaac |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2528685 |
tcaaaatatatagacttatgtttaaaaaagacttcaactcttcgtcggatcaaa-ttgtccttcgtcggtaactgattgcataacaaacaccaaac |
2528591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 2538454 - 2538312
Alignment:
| Q |
139 |
actgtatggatgaaagaaaaatatatttccatcaagacttata---tttttcaacaaatattttaaaaatatattgtaaaaaagttcatgaaaaatgtct |
235 |
Q |
| |
|
||||||| |||||| ||||||||| ||| ||| | |||||||| |||||||||| |||||| ||||||||||||||||||| || ||||||||||||| |
|
|
| T |
2538454 |
actgtattgatgaatgaaaaatatcttttcat-aggacttatactatttttcaacatatatttaaaaaatatattgtaaaaaatttaatgaaaaatgtct |
2538356 |
T |
|
| Q |
236 |
ttctaatttttattgtcaaaatatatagacttatgtttaaaaaa |
279 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
2538355 |
ttctaatttttattatcgaaatatatagacttatgtttaaaaaa |
2538312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 2538489 - 2538421
Alignment:
| Q |
51 |
acaaattcttacctctgctataaagtatagcattgactgtattgatgaacgaaaaatatttttccatag |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||| ||||| |
|
|
| T |
2538489 |
acaaattcttacctctggaataaagtatagtattgactgtattgatgaatgaaaaatatcttttcatag |
2538421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University