View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9265_low_35 (Length: 337)

Name: NF9265_low_35
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9265_low_35
NF9265_low_35
[»] chr3 (13 HSPs)
chr3 (82-321)||(25912268-25912507)
chr3 (21-72)||(54281604-54281655)
chr3 (212-277)||(13622353-13622418)
chr3 (21-72)||(42489192-42489243)
chr3 (21-72)||(43655433-43655484)
chr3 (21-72)||(53427500-53427551)
chr3 (19-69)||(53840948-53840998)
chr3 (21-72)||(25068437-25068488)
chr3 (21-69)||(42121652-42121700)
chr3 (21-72)||(41354506-41354557)
chr3 (21-72)||(48044998-48045049)
chr3 (27-72)||(11058362-11058407)
chr3 (44-72)||(21102698-21102726)
[»] chr4 (8 HSPs)
chr4 (18-72)||(53118869-53118923)
chr4 (21-72)||(865510-865561)
chr4 (21-72)||(32132288-32132339)
chr4 (21-72)||(29144075-29144126)
chr4 (21-72)||(44876159-44876210)
chr4 (21-72)||(12658452-12658503)
chr4 (27-72)||(6711032-6711077)
chr4 (27-72)||(42712049-42712094)
[»] chr8 (11 HSPs)
chr8 (19-72)||(42093521-42093574)
chr8 (20-72)||(30136630-30136682)
chr8 (21-72)||(7601614-7601665)
chr8 (18-69)||(40145111-40145162)
chr8 (20-72)||(14445961-14446013)
chr8 (21-72)||(38938859-38938910)
chr8 (21-72)||(40575158-40575209)
chr8 (21-68)||(41723908-41723955)
chr8 (27-72)||(37727511-37727556)
chr8 (24-72)||(43135596-43135644)
chr8 (28-72)||(43937420-43937464)
[»] chr1 (10 HSPs)
chr1 (21-72)||(30856189-30856240)
chr1 (21-72)||(39840609-39840660)
chr1 (21-72)||(41147190-41147241)
chr1 (21-72)||(1743932-1743983)
chr1 (21-71)||(46047196-46047246)
chr1 (21-72)||(7649122-7649173)
chr1 (21-72)||(43379835-43379886)
chr1 (21-72)||(46728628-46728679)
chr1 (21-68)||(51465848-51465895)
chr1 (216-277)||(40044362-40044423)
[»] chr6 (1 HSPs)
chr6 (21-72)||(3184777-3184828)
[»] chr5 (8 HSPs)
chr5 (25-72)||(32694689-32694736)
chr5 (21-72)||(3098397-3098448)
chr5 (21-72)||(6894444-6894495)
chr5 (25-72)||(40366354-40366401)
chr5 (26-72)||(39084230-39084276)
chr5 (21-72)||(19824823-19824874)
chr5 (21-72)||(8430104-8430155)
chr5 (19-69)||(19431844-19431894)
[»] chr7 (9 HSPs)
chr7 (19-72)||(27483814-27483867)
chr7 (23-72)||(37796693-37796742)
chr7 (18-72)||(14419485-14419539)
chr7 (21-72)||(32497724-32497775)
chr7 (21-72)||(40194575-40194626)
chr7 (26-72)||(46196113-46196159)
chr7 (27-69)||(47723394-47723436)
chr7 (22-71)||(34456754-34456803)
chr7 (44-72)||(8408087-8408115)
[»] chr2 (8 HSPs)
chr2 (19-72)||(2214392-2214445)
chr2 (21-69)||(914480-914528)
chr2 (21-72)||(2075768-2075819)
chr2 (21-72)||(5429142-5429193)
chr2 (21-72)||(15994395-15994446)
chr2 (41-72)||(28783900-28783931)
chr2 (44-72)||(19281822-19281850)
chr2 (21-65)||(44076596-44076640)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 82 - 321
Target Start/End: Complemental strand, 25912507 - 25912268
Alignment:
Q  82 acagggatgaaaattaaaactagtctaaattaaattataaggatgaaaatcatatttaagccaattgtttatcttaactaggttttaagaaagataagga 181  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25912507 acagggatgaaaatcaaaactagtctaaattaaattacaaggatgaaaatcatatttaagccaattgtttatcttaactaggttttaagaaagataagga 25912408  T
Q  182 tgggtgccccaaagttgtcaatttaggaaggaaaattgatgttgacacttcatagtttgctggaaaacaccaataaattactaaaatgaccccatcaaca 281  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25912407 tgggtgccccaaagttgtcaatttagggaggaaaattgatgttgacacttcatagtttgctggaaaacaccaataaattactaaaatgaccccatcagca 25912308  T
Q  282 gtaatagatctctaaactttacgatgtaggttactcactg 321  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  25912307 gtaatagatctccaaactttacgatgtaggttactcactg 25912268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 54281604 - 54281655
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54281604 aataacatgccaagtcagacatgaagtggggtcagggacctttttcaaacaa 54281655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 13622353 - 13622418
Alignment:
Q  212 gaaaattgatgttgacacttcatagtttgctggaaaacaccaataaattactaaaatgaccccatc 277  Q
    |||||||| ||||||||||| |||||| |||| ||||||||  |||||||||||||||||||||||    
T  13622353 gaaaattgttgttgacacttaatagttcgctgaaaaacacctgtaaattactaaaatgaccccatc 13622418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 42489192 - 42489243
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  42489192 aataacatgccaagtcagacatgaagtggggccagagacctttttcaaacaa 42489243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 43655484 - 43655433
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  43655484 aataacatgccaagttagacatgaagtggggccagggacctttttcaaacaa 43655433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 53427551 - 53427500
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| || |||||||| ||||||||||||||||||||    
T  53427551 aataacatgccaagtcagacataaagtggggccagggacctttttcaaacaa 53427500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 53840948 - 53840998
Alignment:
Q  19 caaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaa 69  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  53840948 caaataacatgccaagtcagacatgaaatggggtcagagacctttttcaaa 53840998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 25068488 - 25068437
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||    
T  25068488 aataacatgccaagttagatatgaagtggggccagagacttttttcaaacaa 25068437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 42121652 - 42121700
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaa 69  Q
    ||||||||||||| ||||| |||||||||| |||| |||||||||||||    
T  42121652 aataacatgccaaatcagacatgaagtgggatcagagacctttttcaaa 42121700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 41354557 - 41354506
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| ||||| ||||| ||| || |||||||||||||    
T  41354557 aataacatgccaagtcagacatgaaatggggccagagatctttttcaaacaa 41354506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 48045049 - 48044998
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||| |||||||||||||  ||||||| ||||||| ||||||||||||||||    
T  48045049 aatagcatgccaagtcaggcatgaagtagggtcagagacctttttcaaacaa 48044998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 11058362 - 11058407
Alignment:
Q  27 atgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||| ||||||  ||||||||| ||||||||||||||||||||    
T  11058362 atgccaattcagatcggaagtggggccagggacctttttcaaacaa 11058407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 21102726 - 21102698
Alignment:
Q  44 aagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||||||||||||||||    
T  21102726 aagtggggtcagggacctttttcaaacaa 21102698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 53118923 - 53118869
Alignment:
Q  18 acaaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53118923 acaaataacatgccaagtcagatatgatgtggggtcagggacctttttcaaacaa 53118869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 865561 - 865510
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  865561 aataacatgccaagtcagacatgaagtggggtcagggatctttttcaaacaa 865510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 32132288 - 32132339
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||| |||||||||||||| ||||||||||||||| ||||||||||||||||    
T  32132288 aatagcatgccaagtcagacatgaagtggggtcagagacctttttcaaacaa 32132339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 29144126 - 29144075
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| |||||||| || || |||||||||||||||||    
T  29144126 aataacatgccaagtcagacatgaagtgaggccatggacctttttcaaacaa 29144075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 44876210 - 44876159
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||    
T  44876210 aataacatgtcaagtcagacatgaagtggggccagagacctttttcaaacaa 44876159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 12658503 - 12658452
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||||  |||||| || || ||||||||||||||||||||    
T  12658503 aataacatgccaagtcatttatgaattgtggccagggacctttttcaaacaa 12658452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 6711032 - 6711077
Alignment:
Q  27 atgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||| ||||||  ||||| ||||||||||||||||||||||||    
T  6711032 atgccaaatcagatcggaagtagggtcagggacctttttcaaacaa 6711077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 42712049 - 42712094
Alignment:
Q  27 atgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||| ||||||  ||||||||| ||||||||||||||||||||    
T  42712049 atgccaaatcagatcggaagtggggccagggacctttttcaaacaa 42712094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 42093574 - 42093521
Alignment:
Q  19 caaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42093574 caaataacatgccaagtcagacatgaagtggggtcagggacctttttcaaacaa 42093521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 30136630 - 30136682
Alignment:
Q  20 aaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  30136630 aaataacatgccaagtcaaatatgaagtggggtcatggacctttttcaaacaa 30136682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 7601614 - 7601665
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||  ||||||||||| ||| ||||||||||||||||    
T  7601614 aataacatgccaagtcaggcatgaagtggggccagagacctttttcaaacaa 7601665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 40145111 - 40145162
Alignment:
Q  18 acaaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaa 69  Q
    |||||||||||||||||||| | |||||||||||  ||||||||||||||||    
T  40145111 acaaataacatgccaagtcatacatgaagtggggctagggacctttttcaaa 40145162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 14445961 - 14446013
Alignment:
Q  20 aaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||||| |  |||||||||| || |||||||||||||||||    
T  14445961 aaataacatgccaagtcaaaattgaagtggggccaaggacctttttcaaacaa 14446013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 38938859 - 38938910
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||| |||||||||| |||||| |||| || |||||||||||||||||    
T  38938859 aataacataccaagtcagacatgaagcggggccaaggacctttttcaaacaa 38938910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 40575209 - 40575158
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||| |||||||||||||| ||||||||| ||||  ||||||||||||||||    
T  40575209 aatagcatgccaagtcagacatgaagtggagtcaaagacctttttcaaacaa 40575158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 41723908 - 41723955
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaa 68  Q
    ||||||||| ||||||||| ||||||||||| ||| ||||||||||||    
T  41723908 aataacatgtcaagtcagacatgaagtggggccagagacctttttcaa 41723955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 37727556 - 37727511
Alignment:
Q  27 atgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||| ||||||  ||||||||| ||||||||||||||||||||    
T  37727556 atgccaaatcagatcggaagtggggccagggacctttttcaaacaa 37727511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 43135596 - 43135644
Alignment:
Q  24 aacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||| ||||||||||| |||||||||||||||  | |||||||||||||    
T  43135596 aacacgccaagtcagacatgaagtggggtcagtcatctttttcaaacaa 43135644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 43937464 - 43937420
Alignment:
Q  28 tgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||| | || ||||||||||||||| |||||||||||||    
T  43937464 tgccaagtcaaacataaagtggggtcagggatctttttcaaacaa 43937420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 30856240 - 30856189
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30856240 aataacatgccaagtcagacatgaagtggggtcagggacctttttcaaacaa 30856189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 39840660 - 39840609
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  39840660 aataacatgtcaagtcagacatgaagtggggtcagggacctttttcaaacaa 39840609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 41147190 - 41147241
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  41147190 aataacatgccaaatcagacatgaagtggggtcagggacctttttcaaacaa 41147241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 1743932 - 1743983
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||||||    
T  1743932 aataacatgccaagtcagacatgaagtggggtcagcgaccattttcaaacaa 1743983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 46047196 - 46047246
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaaca 71  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||||    
T  46047196 aatagcatgccaagtcagacatgaagtggggtcaaggacctttttcaaaca 46047246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 7649173 - 7649122
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||    
T  7649173 aataacatgtcaagtcagacatgaagtggggacagagacctttttcaaacaa 7649122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 43379886 - 43379835
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||||||  |||||||||| ||| ||||||||||||||||    
T  43379886 aataacatgccaagtcagacttgaagtggggccagagacctttttcaaacaa 43379835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 46728628 - 46728679
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||| ||||||||| || |||||||| ||| ||||||||||||||||    
T  46728628 aataacatgtcaagtcagacattaagtggggccagtgacctttttcaaacaa 46728679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 51465895 - 51465848
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaa 68  Q
    |||||||||| |||| ||| ||||||||||| ||||||||||||||||    
T  51465895 aataacatgctaagttagacatgaagtggggccagggacctttttcaa 51465848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 40044423 - 40044362
Alignment:
Q  216 attgatgttgacacttcatagtttgctggaaaacaccaataaattactaaaatgaccccatc 277  Q
    |||| ||||||||||| |||||||  | |||||||||||||||||| | |||||||| ||||    
T  40044423 attgttgttgacactttatagtttaattgaaaacaccaataaattattgaaatgacctcatc 40044362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 3184828 - 3184777
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  3184828 aataacatgccaagtcagacatgaagtggggtcagagacctttttcaaacaa 3184777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 32694689 - 32694736
Alignment:
Q  25 acatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32694689 acatgccaagtcagacatgaagtggggtcagggacctttttcaaacaa 32694736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 3098448 - 3098397
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  3098448 aataacatgccaagtcagacatgaagtggggccagagacctttttcaaacaa 3098397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 6894495 - 6894444
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  6894495 aataacatgccaagtcagacatgaagtggggtcaggagcctttttcaaacaa 6894444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 40366401 - 40366354
Alignment:
Q  25 acatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  40366401 acattccaagtcagacatgaagtggggtcagggacctttttcaaacaa 40366354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 39084230 - 39084276
Alignment:
Q  26 catgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||    
T  39084230 catgccaagtcaaacatgaagtggggtcagggacctttttcaaacaa 39084276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 19824874 - 19824823
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||  || ||||||||||||||| ||||||||||||||||    
T  19824874 aataacatgccaagtttgacatgaagtggggtcagagacctttttcaaacaa 19824823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 8430155 - 8430104
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||| | |||||| ||  |||||||||||||||||||||    
T  8430155 aataacatgccaagtcatacatgaagcggcatcagggacctttttcaaacaa 8430104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 19431894 - 19431844
Alignment:
Q  19 caaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaa 69  Q
    |||||| |||| ||||||||| ||||||| ||| |||||||||||||||||    
T  19431894 caaataccatgtcaagtcagacatgaagtagggccagggacctttttcaaa 19431844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 27483814 - 27483867
Alignment:
Q  19 caaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  27483814 caaataacatgccaagtcagatctgaagtgcagtcagggacctttttcaaacaa 27483867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 37796742 - 37796693
Alignment:
Q  23 taacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  37796742 taacatgccaagtcagacatgaagtggggacagggacctttttcaaacaa 37796693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 14419539 - 14419485
Alignment:
Q  18 acaaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||| ||||||||| ||||||||||| |||| |||||||||||||||    
T  14419539 acaaataacatgtcaagtcagacatgaagtggggccaggaacctttttcaaacaa 14419485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 32497724 - 32497775
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||| ||||||| ||||||||||||| ||| ||||||||| ||||||    
T  32497724 aataacatgtcaagtcatatatgaagtggggccagtgacctttttgaaacaa 32497775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 40194575 - 40194626
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||  ||| ||||||| ||| ||||||||||||||||    
T  40194575 aataacatgccaagtcagccatgtagtggggccagagacctttttcaaacaa 40194626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 46196159 - 46196113
Alignment:
Q  26 catgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||| |||||||| ||||||||||| ||| ||||||||||||||||    
T  46196159 catgcaaagtcagacatgaagtggggccagagacctttttcaaacaa 46196113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 47723394 - 47723436
Alignment:
Q  27 atgccaagtcagatatgaagtggggtcagggacctttttcaaa 69  Q
    ||||||| ||||||  |||||||||||||||||||||||||||    
T  47723394 atgccaaatcagattggaagtggggtcagggacctttttcaaa 47723436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 34456803 - 34456754
Alignment:
Q  22 ataacatgccaagtcagatatgaagtggggtcagggacctttttcaaaca 71  Q
    |||||||| ||||||||| ||||||| |||  ||||||||||||||||||    
T  34456803 ataacatgtcaagtcagacatgaagtagggctagggacctttttcaaaca 34456754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 8408115 - 8408087
Alignment:
Q  44 aagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||||||||||||||||    
T  8408115 aagtggggtcagggacctttttcaaacaa 8408087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 2214445 - 2214392
Alignment:
Q  19 caaataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||| |||||||||||| ||||||||| | ||||||||||||||||||||    
T  2214445 caaataacttgccaagtcagacatgaagtggagccagggacctttttcaaacaa 2214392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 914528 - 914480
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaa 69  Q
    ||||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  914528 aataacatgccaagtcagacatgaaatggggccagggacctttttcaaa 914480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 2075819 - 2075768
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||||   ||||||||||||||| ||||||||||||||||    
T  2075819 aataacatgccaagtcaagcatgaagtggggtcagagacctttttcaaacaa 2075768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 5429193 - 5429142
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||| |||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  5429193 aatatcatgccaagtcagacatgaagtagggccagggacctttttcaaacaa 5429142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 15994395 - 15994446
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggacctttttcaaacaa 72  Q
    |||||||| |||||||||| ||||||||||| ||  ||||||||||||||||    
T  15994395 aataacataccaagtcagacatgaagtggggccaaagacctttttcaaacaa 15994446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 72
Target Start/End: Complemental strand, 28783931 - 28783900
Alignment:
Q  41 atgaagtggggtcagggacctttttcaaacaa 72  Q
    ||||||||||||||||||||||||||||||||    
T  28783931 atgaagtggggtcagggacctttttcaaacaa 28783900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 19281850 - 19281822
Alignment:
Q  44 aagtggggtcagggacctttttcaaacaa 72  Q
    |||||||||||||||||||||||||||||    
T  19281850 aagtggggtcagggacctttttcaaacaa 19281822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 44076596 - 44076640
Alignment:
Q  21 aataacatgccaagtcagatatgaagtggggtcagggaccttttt 65  Q
    ||||||||||||||||||| || || ||||||||| |||||||||    
T  44076596 aataacatgccaagtcagacataaaatggggtcagagaccttttt 44076640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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