View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_38 (Length: 326)
Name: NF9265_low_38
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 309
Target Start/End: Complemental strand, 5939693 - 5939397
Alignment:
| Q |
14 |
cagagacctcaagattctttatattgcggttgcagactgcaatttaaaaccaatactaaaatagcatgcttatgatttcatatattttatatttttggtc |
113 |
Q |
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|||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5939693 |
cagagacctcaaaattcttaatattgcagttgcagactgcaatttaaaaccaatactaaaatagcatgcttatgatttcatatattttatatttttggtc |
5939594 |
T |
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| Q |
114 |
taa-gtttttggataaattaaatggtgatttcatgcagcattacaagcaagggtaagctataacagttgggagtgtttatctccagaagggtttgcatta |
212 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5939593 |
taaagtttttggataaatgaaatggtgatttcatgcagcattacaagcaagggtaagctataacagttgggagtgtttatctccagaagggtttgcatta |
5939494 |
T |
|
| Q |
213 |
aattcaaaatggaatgaagcagaaaaatatatatgcaatccactttcaggggaggtgccaatggaatgtttatcagcaaaaactcttagtggaagat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5939493 |
aattcaaaatggaatgaagcagaaaaatatatatgcaatccactttcaggggaggtgccaatggaatgtttatcagcaaaaactcttagtggaagat |
5939397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 6894339 - 6894478
Alignment:
| Q |
171 |
tataacagttgggagtgtttatctccagaagggtttgcattaaattcaaaatggaatgaagcagaaaaatatatatgcaatccactttcaggggaggtgc |
270 |
Q |
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||||| |||||||| || ||||| ||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||| || | |
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| T |
6894339 |
tataaaagttgggaatgcttatcaccagatggatttgcattaaattccaaatggaatgaagcagagaagtatatatgcaatcctctttcaggggaagtac |
6894438 |
T |
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| Q |
271 |
caatggaatgtttatcagcaaaaactcttagtggaagatt |
310 |
Q |
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| T |
6894439 |
caatggaatgtttatctgcaaaaactcttagtggaagatt |
6894478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 9845147 - 9845098
Alignment:
| Q |
16 |
gagacctcaagattctttatattgcggttgcagactgcaatttaaaacca |
65 |
Q |
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| T |
9845147 |
gagacctcaaaatcctttatattgcggctgcagactgcaattcaaaacca |
9845098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 32168740 - 32168712
Alignment:
| Q |
37 |
ttgcggttgcagactgcaatttaaaacca |
65 |
Q |
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| T |
32168740 |
ttgcggttgcagactgcaatttaaaacca |
32168712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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