View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_42 (Length: 290)
Name: NF9265_low_42
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 274
Target Start/End: Complemental strand, 21183050 - 21182802
Alignment:
| Q |
26 |
gcaaggctacggagtttcttggaaaactttgttgcaaaagaagtgtcattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaag |
125 |
Q |
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| T |
21183050 |
gcaaggctgcggagtttcttggaaaactttgttgcaaaagaagtgtcattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaag |
21182951 |
T |
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| Q |
126 |
ctgaatgatgagtattggatgggatttcatattccaagataccggcaacggtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcat |
225 |
Q |
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| T |
21182950 |
ctgaatgatgagtattggatgggatttcatattccaagataccggcaacagtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcat |
21182851 |
T |
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| Q |
226 |
taagaaggctgcattgggatagtgagacttggtcttgagaagaacatta |
274 |
Q |
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| T |
21182850 |
taagaaggctgcattgggatagtgagacttggtcttgagaagaacatta |
21182802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 21205534 - 21205276
Alignment:
| Q |
16 |
ctgtgcactagcaaggctacggagtttcttggaaaactttgttgcaaaagaagtgtcattaagtgcagggagagtaggtttgaaaagtggaatctttttt |
115 |
Q |
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| T |
21205534 |
ctgtgcacttgctaggctacggagtttgttggagaactttgttgcaaaggatgtatcattaaatgcaggaagaataggtttgaatagaggatgctttttt |
21205435 |
T |
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| Q |
116 |
agtgaagaagctgaatgatgagtattggatgggatttcatattccaagataccggcaacggtggtgttgtcaaaagttccctggccggtagcatatggtc |
215 |
Q |
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| T |
21205434 |
agtgaagaagctgaatgatgagtatttggtgggatttcatattcaaggatagcagcgaccgttgtgttgtcaaaaggtccagggccagcggcatagggtc |
21205335 |
T |
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| Q |
216 |
tagcactcattaagaaggctgcattgggatagtgagacttggtcttgagaagaacatta |
274 |
Q |
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| T |
21205334 |
tagcagtcattaagaatgccgcattgggatagtgtgacttggtattgagaagaacatta |
21205276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 274
Target Start/End: Complemental strand, 21853724 - 21853503
Alignment:
| Q |
53 |
tttgttgcaaaagaagtgtcattaagtgcagggagagtaggtttgaaaagtggaatcttttttagtgaagaagctgaatgatgagtattggatgggattt |
152 |
Q |
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| T |
21853724 |
tttgttgcaaatgaagtgtcattaagttgaggtagaataggtttcaaaagtggaagttttttgagtgaagaatttgaatggtgagtattaaatggaattt |
21853625 |
T |
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| Q |
153 |
catattccaagataccggcaacggtggtgttgtcaaaagttccctggccggtagcatatggtctagcactcattaagaaggctgcattgggatagtgaga |
252 |
Q |
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| T |
21853624 |
catattctatgattccagcaactgttgagttgtcaaaagtgccttggcctgtagcatatggtcttgctaacattaagaatgtagcatttgggtaatgagg |
21853525 |
T |
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| Q |
253 |
cttggtcttgagaagaacatta |
274 |
Q |
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| T |
21853524 |
tttggttttgagaagaacatta |
21853503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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