View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_47 (Length: 260)
Name: NF9265_low_47
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 46736490 - 46736728
Alignment:
| Q |
1 |
ctagatgctgtccaagtgcattagcaggtataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgacaatgttgga |
100 |
Q |
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| T |
46736490 |
ctagatgctgtccaagtgcattagcagatataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgacaatgttgga |
46736589 |
T |
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| Q |
101 |
agaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataatagtcatactca |
200 |
Q |
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| T |
46736590 |
aaaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataataatcatactca |
46736689 |
T |
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| Q |
201 |
atttttaatgagtattattatgtacattaagtaagtcat |
239 |
Q |
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| T |
46736690 |
atttttaatgagtataattatgtacattaagtaagtcat |
46736728 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 986195 - 986262
Alignment:
| Q |
66 |
cgtccggaaatgaaagatgtggtgacaatgttggaagaaattgatacaagcaaaggaggcggaatgat |
133 |
Q |
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| T |
986195 |
cgtccggaaatgaaggatgtggtgataatgctagaagcactggatacaagcaaaggtggtggaatgat |
986262 |
T |
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