View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9265_low_5 (Length: 658)

Name: NF9265_low_5
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9265_low_5
NF9265_low_5
[»] chr1 (1 HSPs)
chr1 (20-646)||(34670052-34670677)


Alignment Details
Target: chr1 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 20 - 646
Target Start/End: Complemental strand, 34670677 - 34670052
Alignment:
Q  20 atcacaaaggttgaatgaagaannnnnnnggaagttggaaacttagaatcacatgtagatgaaatattataagtcagttgaggtttcatttacctttcca 119  Q
    |||||||||||| |||||||||       |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670677 atcacaaaggtttaatgaagaatttttttggaa-ttggaaacttagaatcacatgtagatgaaatattataagtcagttgaggtttcatttacctttcca 34670579  T
Q  120 ccatgagggatgatgccacgcaactctttaagacagtcttggatctgctgccgatcttttggtcgtggccgagtgctctcccccggcttagccttcttct 219  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670578 ccatgagggatgatgccacgcaactctttaagacagtcttgaatctgctgccgatcttttggtcgtggccgagtgctctcccccggcttagccttcttct 34670479  T
Q  220 tgttgggctttgcgggctcgtccagttttctagggtgtaccggaacagccctcttaaggttgatgctatttctatcattaaccaacatacctacttgtaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670478 tgttgggctttgcgggctcgtccagttttctagggtgtaccggaacagccctcttaaggttgatgctatttctatcattaaccaacatacctacttgtaa 34670379  T
Q  320 ttttgggagtgtatctttccttgttataacactattggacttgtccaagtcagaaacagaatgcatcaagtttggtctagtttcagttccatcaaggttt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670378 ttttgggagtgtatctttccttgttataacactattggacttgtccaagtcagaaacagaatgcatcaagtttggtctagtttcagttccatcaaggttt 34670279  T
Q  420 gcaaaatgtacttgagtttgattcaagggagaaagttctaccatctgctttttattagatgataacagctcattttcaaaattagaactattaaaaggat 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670278 gcaaaatgtacttgagtttgattcaagggagaaagttctaccatctgctttttattagatgataacagctcattttcaaaattagaactattaaaaggat 34670179  T
Q  520 tgttgtaaattgcttcacctctcaaaagttcttcaattcctaactctgagaataacctcttccgagtattattagtcggtgtaccggtattcaactctga 619  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34670178 tgttgtaaattgcttcacctctcaaaagctcttcaattcctaactctgagaataacctcttccgagtattatcagtcggtgtaccggtattcaactctga 34670079  T
Q  620 tatgcattcagaaaagccagtattatc 646  Q
    |||||||||||||||||||||||||||    
T  34670078 tatgcattcagaaaagccagtattatc 34670052  T

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