View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_52 (Length: 251)
Name: NF9265_low_52
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_52 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 24200721 - 24200961
Alignment:
| Q |
11 |
cagagaagattgaaaaaggttttgcaaactatccgttacttgtggtggactttgaggttcaaggtccaaactctcttcgtcgtcaagtatgctataagga |
110 |
Q |
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| T |
24200721 |
cagagaagattgaaaaagattttgcaaactatccgttacttgtggtggactttgaggttcaaggtccaaactctcttcgtcgtcaagtatgctataagga |
24200820 |
T |
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| Q |
111 |
cgacgttggccttcaaaacgatctaactgaagcctgcaaacaggacaggttttactggtgttaacccaacgaagaatgcattcgaacttgtatgtatgct |
210 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24200821 |
cgacattggccttcaaaacgatctaactgaagcctgcaaacaggacaggttttactggtgttaagccaacgaagaatgcattcgaacttgtatgtatgct |
24200920 |
T |
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| Q |
211 |
tgcagggtaactggcatgcttggtcaccaagtttaaactcc |
251 |
Q |
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| T |
24200921 |
tgcagggtaactggcatgcttggtcaccaagtttaaactcc |
24200961 |
T |
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