View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_6 (Length: 631)
Name: NF9265_low_6
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 3e-53; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 142 - 302
Target Start/End: Complemental strand, 2111189 - 2111015
Alignment:
| Q |
142 |
aattctgctcatgcatattaatactttggtccaagagagcatgcgtgtaaacca----agtagttactcttctctaaaaattaccaaaacaaagaat--- |
234 |
Q |
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| T |
2111189 |
aattctgctcatgcatattaatactttggtccaagagaccatgcgtgtaaaccaagtaagtagttactcttctctaaaaattaccaaaacaaagaatacc |
2111090 |
T |
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| Q |
235 |
-------aaaccaaacacttttaggaaggatgccagttagagcatactatatattaccccaaataatgtcaatta |
302 |
Q |
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| T |
2111089 |
ttataccaaactaaacacttttaggaaggataccagttagagcatactatctattaccccaaataatgtcaatta |
2111015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 2111370 - 2111239
Alignment:
| Q |
11 |
agcagagaaagagaaaatggggagtaatgagaggttggtgagaa-ccattgtatctatgat-----ctatggtctcattggtttgttgctatggaatgct |
104 |
Q |
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| T |
2111370 |
agcaaagaaagagaaaatggggagttatgagaggttggtgagaaaccattgtatctatgatatgatctatggtctcattggtttgttgctatggaaagct |
2111271 |
T |
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| Q |
105 |
agaagtggaaacttttgtgtttctgcatgaaa |
136 |
Q |
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| T |
2111270 |
agaagaggaaacttttgtgtatctgcatgaaa |
2111239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 2129423 - 2129325
Alignment:
| Q |
128 |
tgcatgaaaagggaaattctgctcatgcatattaatactttggtccaagagagcatgc-gtgtaaaccaagtagttactcttctctaaaaattaccaaa |
225 |
Q |
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| T |
2129423 |
tgcatgaaaagggaaattctgcccatgcatattaatactttggtccaagagaccatgctttgtagataaagtagttactcttctctaaaaattaccaaa |
2129325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 2129529 - 2129447
Alignment:
| Q |
54 |
accattgtatctatgatctatggtctcattggtttgttgctatggaatgctagaagtggaaacttttgtgtttctgcatgaaa |
136 |
Q |
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| T |
2129529 |
accattgtatctatgatctatggcctcattggtttgttgtgatgaaatgctagaagtggaaagttttgtgtttctgcatgaaa |
2129447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 430
Target Start/End: Complemental strand, 2114994 - 2114956
Alignment:
| Q |
392 |
catacaggtccttaaatatgcatttcatcactcaaatta |
430 |
Q |
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| T |
2114994 |
catacaggtccttaaatatgcatttcatcgctcaaatta |
2114956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 353 - 484
Target Start/End: Original strand, 39181423 - 39181552
Alignment:
| Q |
353 |
aatgtagatcatattaatatcagaaagatgagaatcacgcatacaggtccttaaatatgcatttcatcactcaaattaatcactctaagaagaattagac |
452 |
Q |
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| T |
39181423 |
aatgtagatcgtattaatatcagaaagatgagaatcacacatacaggtccttaaatatgcatttcatcactcaaatt--tccctctgagaagaattagac |
39181520 |
T |
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| Q |
453 |
caatgagatgcatactgaagggacttctgtgg |
484 |
Q |
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| T |
39181521 |
caatgcaatgcatgcttaagggacttctgtgg |
39181552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 39181235 - 39181325
Alignment:
| Q |
241 |
aacacttttaggaaggatgccagttagagcatactatatattaccccaaataatgtcaattat-gaagctactcatctacactggaacatc |
330 |
Q |
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| T |
39181235 |
aacacgtttaggaaggatactagttagaacatactatctattaacccaaaaaatgtccattttctaagttactcaactacactggaacatc |
39181325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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