View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9265_low_70 (Length: 204)
Name: NF9265_low_70
Description: NF9265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9265_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 51739665 - 51739836
Alignment:
| Q |
19 |
agttgtatcatacacaagttcccctatggtcatccgtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtctgccgcattg |
118 |
Q |
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| T |
51739665 |
agttgtatcatacacaagttcccctatggtcatccgtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtccgccgcattg |
51739764 |
T |
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| Q |
119 |
attgtagaaatgggttgcttattggtgtttaatatgatggttaatacgaagatggatgataagaagtataat |
190 |
Q |
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| T |
51739765 |
attgtagaaatgggttgcttattggtgtttaatatgatggttaatacgaagatggatgataagaagtataat |
51739836 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 10200362 - 10200481
Alignment:
| Q |
23 |
gtatcatacacaagttcccctatggtcatccgtttggcagcagatttaaggtttgccgcatctgatgtcggtcgaatcgctgtgtctgccgcattgattg |
122 |
Q |
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| T |
10200362 |
gtatcatacacaagctcccccatggtgattcgtttgacggcggagttacgatttgctgcatccgatatcgggcgaatcgcggtgtcttcagcgttgatta |
10200461 |
T |
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| Q |
123 |
tagaaatgggttgcttattg |
142 |
Q |
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| T |
10200462 |
cagaaatggcttgcttattg |
10200481 |
T |
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