View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9266_high_10 (Length: 452)
Name: NF9266_high_10
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 61 - 434
Target Start/End: Complemental strand, 44766476 - 44766103
Alignment:
| Q |
61 |
tcggaagatgaagattggggaaaaaatgcggtattggagaatgttgttgatgataatgatgatgaagatatggaactggaggaagaaaatgaagttgtag |
160 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44766476 |
tcggaagatgaagattggggaaaaaatgctgtattggagaatgttgtggatgataatgatgatgaagatatggaactggaggaagaaaatgaagttgtag |
44766377 |
T |
|
| Q |
161 |
agagtgctaaaggaaagaatagtaataaggttgagccgaaaaagcggaaactaggcggaggagcaaaaatggagccgatgaaaaagagcaagagtggaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44766376 |
agagtgctaaaggaaagaatagtaataaggttgagccgaaaaagcggaaactaggcggaggagcaaaaatggagccgatgaaaaagagcaagagtggaaa |
44766277 |
T |
|
| Q |
261 |
tgaagttaacagggtagctgttaagctctcaccattggcgcctttgaataatttggagggtgagtgaccaagttaatccaccctcaatccttgttttaat |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44766276 |
tgaagttaacagggtagctgttaagctctcaccattggcgcctttgaataatttggagggtgagtgaccaagttaatccaccctcaatccttgttttaat |
44766177 |
T |
|
| Q |
361 |
gtattgagaattgagattaattttgtttctgtcatttacacctttttatagaatattgatataaatgcaaacac |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44766176 |
gtattgagaattgagattaattttgtttctgtcatttacacctttttatagaatattgatataaatgcaaacac |
44766103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University