View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_high_13 (Length: 390)
Name: NF9266_high_13
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 187 - 371
Target Start/End: Complemental strand, 5895269 - 5895086
Alignment:
| Q |
187 |
atttgttgagttggccttgcaaaatttagaatatgcgccgaataaagctctaatatttttcaggtgggtggagaagagtgggcaatttaagcatgacgaa |
286 |
Q |
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| T |
5895269 |
atttgttgagttggccttacaaaatttagaa-atgtgcctagtaaagctttaatatttttcaggtgggtggagaagagtgggcagtttaagcatgacgaa |
5895171 |
T |
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| Q |
287 |
ctaaagcacactaagatggcgatgattcttcaaagcgagtatttgattgatcagttttggaagttagtttatgatatgaggagtg |
371 |
Q |
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| T |
5895170 |
cgtaagtatactaagatggcgatgattcttcaaagcgagtatttgattgatcagttttggaagttagtttatgatatgaggagtg |
5895086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 5895482 - 5895313
Alignment:
| Q |
17 |
agacctcgatttaaatcacgtttcgattagtcacgctgctgttaacgcaaggaagtttgaaaagggtggaatggatggtgaggctgtgaaatccatggaa |
116 |
Q |
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| T |
5895482 |
agacctcgattcaaatcacgtttcgattagtcacgatgctgtcaacggaaggaagtttgaaaagtgtggaatggatggtgaggctgtgaaatccagggaa |
5895383 |
T |
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| Q |
117 |
ttgtttgataaggatacatttgagaggatatattctcg-caaatatttcaaattcgccaccctttatcaa |
185 |
Q |
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| T |
5895382 |
ttgtttgataaggatagatttgagaggatatattctcgaaaaaaatttcaaattccccaccccttatcaa |
5895313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 5880996 - 5880924
Alignment:
| Q |
72 |
tttgaaaagggtggaatggatggtgaggctgtgaaatccatggaattgtttgataaggatacatttgagagga |
144 |
Q |
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| T |
5880996 |
tttgaaaagggtggaatgaatggtgatgctgtgaagttgaaggagttgtttgataaggatacagttgagagga |
5880924 |
T |
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