View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9266_high_16 (Length: 352)
Name: NF9266_high_16
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_high_16 |
 | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
| [»] scaffold0437 (1 HSPs) |
| | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 41248344 - 41248048
Alignment:
| Q |
11 |
gtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248344 |
gtgttctcccacctaatattaattcaaatatgttggtccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaa |
41248245 |
T |
|
| Q |
111 |
ttttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgataga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248244 |
ttttcaatttaaaattgttacgaaaattttagctgacagactttctattattactatgcgcatcatttctccggagcaacgggggtttattcgtgataga |
41248145 |
T |
|
| Q |
211 |
aatatttcggattgtattattatggcatcagaggcggttaatatgattgac-aaaggcagtttggtggcaatgtggctttgaaagttgatattaaaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41248144 |
aatatttcggattgtattattatggcatcagaggcggttaatatgattgacaaaaggcagtttggtggcaatttggctttgaaagttgatattaaaa |
41248048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 44377481 - 44377576
Alignment:
| Q |
52 |
attcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgac |
147 |
Q |
| |
|
|||||||| || ||||||| || | ||||||||| ||||| ||||| ||| | || |||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
44377481 |
attcctaaaattccaggggcccaagctatgggagatttccgacctattgctttagctaattttcaatttaaaattgtgacgaagattttggctgac |
44377576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 44393061 - 44393156
Alignment:
| Q |
52 |
attcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgac |
147 |
Q |
| |
|
|||||||| || ||||||| || | ||||||||| ||||| ||||| ||| | || |||||||||||||||||||| ||||| ||||| |||||| |
|
|
| T |
44393061 |
attcctaaaattccaggggcccaagctatgggagatttccgacctattgctttagctaattttcaatttaaaattgtgacgaagattttggctgac |
44393156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 10708905 - 10708579
Alignment:
| Q |
10 |
ggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaa |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
10708905 |
ggtgttctcccgcctaatattaattcaaatatgctggtccttattcctaagatcacaggggcgcatgccatgggggacttccgtcctatagctcttgcaa |
10708806 |
T |
|
| Q |
110 |
attttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatag |
209 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
10708805 |
attttcaatttaaaattgtttcgaaaattttagttgacaaactttctattatcactatgcgcatcatttcttcggagcaacaggggtttattcaggatag |
10708706 |
T |
|
| Q |
210 |
aaatatttcggattgtattattatggcatcagaggcggttaatatgattga-caaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
308 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10708705 |
gaatatttcggtttgtattattattgcatcaaaggcggttagtatgattgataaaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
10708606 |
T |
|
| Q |
309 |
gcattcaacacgttggattggaacttt |
335 |
Q |
| |
|
|| ||||| |||||||||||||||||| |
|
|
| T |
10708605 |
gccttcaatacgttggattggaacttt |
10708579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 10922675 - 10922349
Alignment:
| Q |
10 |
ggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaa |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
10922675 |
ggtgttctcccgcctaatattaattcaaatatgctggtccttattcctaagatcacaggggcgcatgccatgggggacttccgtcctatagctcttgcaa |
10922576 |
T |
|
| Q |
110 |
attttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatag |
209 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
10922575 |
attttcaatttaaaattgtttcgaaaattttagttgacaaactttctattatcactatgcgcatcatttcttcggagcaacaggggtttattcaggatag |
10922476 |
T |
|
| Q |
210 |
aaatatttcggattgtattattatggcatcagaggcggttaatatgattga-caaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
308 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10922475 |
gaatatttcggtttgtattattattgcatcaaaggcggttagtatgattgataaaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
10922376 |
T |
|
| Q |
309 |
gcattcaacacgttggattggaacttt |
335 |
Q |
| |
|
|| ||||| |||||||||||||||||| |
|
|
| T |
10922375 |
gccttcaatacgttggattggaacttt |
10922349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Original strand, 20382629 - 20382727
Alignment:
| Q |
52 |
attcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaatttt-caatttaaaattgttacgaaaattttagctgacag |
149 |
Q |
| |
|
||||||||| ||||| |||| |||| |||||| |||||| ||| ||||||||| || ||||| || |||||||||||||| |||| |||||| ||||| |
|
|
| T |
20382629 |
attcctaaggtcacacgggcccaggctatgggtgacttctgtcttatagctctagcggatttttcagtttaaaattgttactaaaactttagcagacag |
20382727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 55 - 307
Target Start/End: Complemental strand, 44080 - 43827
Alignment:
| Q |
55 |
cctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagacttt |
154 |
Q |
| |
|
|||||| ||| ||| ||| |||| ||||| |||||||||||||||||||||||||| || |||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
44080 |
cctaaggtcaaaggagcgtaggtcatgggggacttccgtcctatagctcttgcaaacttccaatttaaaattgtcacaaaaatcttagctgacagacttt |
43981 |
T |
|
| Q |
155 |
ctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatat |
254 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| | |
|
|
| T |
43980 |
ctattattgctatgcgcattatttctccggagcagcgggggtttattcgtgatagaaatatttcggagtgtattattcttgcatcagaggccattaattt |
43881 |
T |
|
| Q |
255 |
gattgacaaa-ggcagtttggtggcaatgtggctttgaaagttgatattaaaaa |
307 |
Q |
| |
|
|||||| ||| | ||||||| ||||||||||| ||| |||| ||||||||||| |
|
|
| T |
43880 |
gattgataaatgacagtttgacggcaatgtggcattgtaagtcgatattaaaaa |
43827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 121; Significance: 6e-62; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 79 - 338
Target Start/End: Original strand, 125393 - 125648
Alignment:
| Q |
79 |
atgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcattt |
178 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
125393 |
atgggagactttcgccctattgctcttgcaaattttcaatttaaaattgttacgaagatattagctgacaggctctctat-----ctatgcgcatcattt |
125487 |
T |
|
| Q |
179 |
ctccggagcaacgggggtttattcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatatgattga-caaaggcagtttggtgg |
277 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||| |||| ||||||||| | |||||| ||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
125488 |
ctccggagcaacgggcttttattcatgataggaatatatcgggatgtattattcttgcatcaaaggtcgttaataggattgataaaaggcagtttggtgg |
125587 |
T |
|
| Q |
278 |
caatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttg |
338 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||| ||||||| |||||||| |||||| |
|
|
| T |
125588 |
caatgtggctttgaaggttgatattaaaaaggtatttgacacgttagattggaattttttg |
125648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 21490691 - 21490360
Alignment:
| Q |
10 |
ggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaa |
109 |
Q |
| |
|
|||| |||||| ||||||||||| || |||||| | | || | |||||| ||||||| |||||||| ||||| ||||| ||||||||||||||||| | |
|
|
| T |
21490691 |
ggtgctctcccgcctaatattaactctaatatgcttgtttttctccctaaggtcacaggagcgcaggtcatgggggactttcgtcctatagctcttgcta |
21490592 |
T |
|
| Q |
110 |
attttcaatttaaaattgttacgaaaattttagctgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatag |
209 |
Q |
| |
|
| || |||||||||||||| || |||||||||||||||||||| |||||||| ||||||| | ||||||||||||| || |||||||||| |||||| |
|
|
| T |
21490591 |
acttccaatttaaaattgtcacaaaaattttagctgacagactctctattattgctatgcgtgttgtttctccggagcagcgcgggtttattcatgatag |
21490492 |
T |
|
| Q |
210 |
aaatatttcggattgtattattatggcatcagaggcggttaatatgattgacaaa-ggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
308 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| ||| | ||||||| ||||||||||| || ||||| ||||||||||| |
|
|
| T |
21490491 |
aaatatttcggagtgtattattattgcatcggaggccattaatttgattgataaacgatagtttggcggcaatgtggcattaaaagtcgatattaaaaag |
21490392 |
T |
|
| Q |
309 |
gcattcaacacgttggattggaactttttgat |
340 |
Q |
| |
|
|| || | || ||||||||||| || ||||| |
|
|
| T |
21490391 |
gcctttgatacattggattggaatttcttgat |
21490360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 41346631 - 41346571
Alignment:
| Q |
78 |
tatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaatt |
138 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||| ||||||||||||||| |||| |||||| |
|
|
| T |
41346631 |
tatgggagactaccgtcctatcgctgctgcaaactttcaatttaaaattattactaaaatt |
41346571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 31349273 - 31349183
Alignment:
| Q |
65 |
caggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagactttc |
155 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||| | |||||||||| ||||||||| | || |||||||||||||||||| |||| |
|
|
| T |
31349273 |
caggggcgcaggttatgggtgatttccgacctatagctttgacaaattttcagtttaaaattatcacaaaaattttagctgacagattttc |
31349183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 16224540 - 16224589
Alignment:
| Q |
91 |
cgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaatttt |
140 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
16224540 |
cgtcctatttctctcgcaaattttcaatttaaaattgttgcgaagatttt |
16224589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 22834049 - 22833997
Alignment:
| Q |
109 |
aattttcaatttaaaattgttacgaaaattttagctgacagactttctattat |
161 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| ||||||||||| ||||||| |
|
|
| T |
22834049 |
aattttcaatttaaaattattactaagattttggctgacagactggctattat |
22833997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 8354 - 8416
Alignment:
| Q |
91 |
cgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagactt |
153 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||| ||||||||| | || ||||||||| |
|
|
| T |
8354 |
cgtcccatagcgcttgccaattttcaatttaaaattgtcacgaaaattgtggccgacagactt |
8416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 7664808 - 7664850
Alignment:
| Q |
106 |
gcaaattttcaatttaaaattgttacgaaaattttagctgaca |
148 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
7664808 |
gcaaattttcagtttaaaattgttactaaaattttagctgaca |
7664850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 8705 - 8778
Alignment:
| Q |
65 |
caggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaatt |
138 |
Q |
| |
|
||||| ||| |||||||||||||| || || || ||||||||||||||||| |||||| || |||| |||||| |
|
|
| T |
8705 |
cagggccgcgggttatgggagactatcgaccgattgctcttgcaaattttcagtttaaagttattactaaaatt |
8778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 26301 - 26233
Alignment:
| Q |
78 |
tatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctga |
146 |
Q |
| |
|
|||||| |||| ||||||||| |||||||| |||||||| || ||||| | || |||||||||||||| |
|
|
| T |
26301 |
tatgggtgactaccgtcctattgctcttgcgaattttcagttcaaaataataactaaaattttagctga |
26233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 26695337 - 26695389
Alignment:
| Q |
109 |
aattttcaatttaaaattgttacgaaaattttagctgacagactttctattat |
161 |
Q |
| |
|
|||||||||||||||||| |||| || ||||| ||||||||||| ||||||| |
|
|
| T |
26695337 |
aattttcaatttaaaattattactaagattttggctgacagactggctattat |
26695389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 26965069 - 26965121
Alignment:
| Q |
109 |
aattttcaatttaaaattgttacgaaaattttagctgacagactttctattat |
161 |
Q |
| |
|
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|
|
| T |
26965069 |
aattttcaatttaaaattattactaagattttggctgacagactggctattat |
26965121 |
T |
|
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 14676977 - 14676909
Alignment:
| Q |
78 |
tatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgttacgaaaattttagctga |
146 |
Q |
| |
|
|||||| |||| ||||||||| |||||||| |||||||| || ||||| | || |||||||||||||| |
|
|
| T |
14676977 |
tatgggtgactaccgtcctattgctcttgcgaattttcagttcaaaataataactaaaattttagctga |
14676909 |
T |
|
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