View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9266_high_20 (Length: 316)
Name: NF9266_high_20
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 34851025 - 34851323
Alignment:
| Q |
1 |
tcttcatcaatttcgaaaaagatttaataaatatcaaataaatttaggcatagcactagtataatacaaacaatgtaggacaggaatcaagaagcaaatt |
100 |
Q |
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| T |
34851025 |
tcttcatcaatttcgaaaaagatttaataaatatcaaataaatttaggcatagcactagtataacacaaacgatgtaggacaggaatcaagaagcaaatt |
34851124 |
T |
|
| Q |
101 |
cgtattctgtaatatgataattgacagtataaaaagtgatgcaacaatgcaagcaaccttacaagtgaaaattcttcatcaaatttgaaaaatatttaac |
200 |
Q |
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| T |
34851125 |
cgtattctgtaatatgataattgacagtataaaaagtgatgcaacaatgcaagcaaccttacaagtgaaaattcttcatcaaatttgaaaaatatttaac |
34851224 |
T |
|
| Q |
201 |
aactatcaagtgaatttagttaacacataaatttaagcataaccctagtataacaatgtaggagaggaatcaagaagcaaactcctcttatattctaag |
299 |
Q |
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| T |
34851225 |
aactatcaagtgaatttagttaacacataaatttaagcataaccctagtataacaatgtaggagaggaatcaagaagcaaactcctcttatattctaag |
34851323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 34851331 - 34851448
Alignment:
| Q |
132 |
aaaagtgatgcaacaatgcaagcaaccttacaagtgaaaattcttcatcaaatttgaaaaatatttaacaactatcaagtgaatttagttaacacataaa |
231 |
Q |
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| T |
34851331 |
aaaagtgatgccacaatgtaagcaacctttcaagtgaaaattactaatcaaaattaacaaagatttaacaactatcaagttcatttaataaagacctaaa |
34851430 |
T |
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| Q |
232 |
tttaagcataaccctagt |
249 |
Q |
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| T |
34851431 |
tttaagcctaaccctagt |
34851448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 34851006 - 34851071
Alignment:
| Q |
154 |
caaccttacaagtgaaaattcttcatcaaatttgaaaaatatttaacaactatcaagtgaatttag |
219 |
Q |
| |
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|||| |||||||||||||||||||||||| || |||||| |||||| || |||||| | ||||||| |
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| T |
34851006 |
caactttacaagtgaaaattcttcatcaatttcgaaaaagatttaataaatatcaaataaatttag |
34851071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 291
Target Start/End: Complemental strand, 4298613 - 4298449
Alignment:
| Q |
133 |
aaagtgatgcaacaatgcaagcaaccttacaagtgaaaattcttcatcaaatttgaaaaatatttaacaactatcaagtgaatttagttaacacataaat |
232 |
Q |
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||||||| || ||| || ||||||||||||||||||||||| ||||||| || |||| |||||||| | ||||||||| | |||| |||| ||||| |
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| T |
4298613 |
aaagtgacgccacattgtaagcaaccttacaagtgaaaatttgtcatcaatttccaaaacgatttaacagcgatcaagtgagtctagtaaacatgtaaat |
4298514 |
T |
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| Q |
233 |
ttaagcataaccctagtat------aacaatgtaggagaggaatcaagaagcaaactcctcttat |
291 |
Q |
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| T |
4298513 |
ttaagcataaccctagtatgacaaaaacaatgtaatagaggaatcaataagcaaatccctcttat |
4298449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 4298518 - 4298359
Alignment:
| Q |
39 |
taaatttaggcatagcactagtataatacaaacaatgtaggacaggaatcaagaagcaaattcgtattctgtaatatgataattgacagtataaaaagtg |
138 |
Q |
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|||||||| ||||| | ||||||| | | |||||||||| | ||||||||| |||||||| | | || ||| |||||||| ||| |||||||| |
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| T |
4298518 |
taaatttaagcataaccctagtatgacaaaaacaatgtaatagaggaatcaataagcaaatccctcttatgttatatgata-------gtacaaaaagtg |
4298426 |
T |
|
| Q |
139 |
atgcaacaatgcaagcaaccttacaagtgaaaattcttcatcaaatttgaaaaatatttaacaacta |
205 |
Q |
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|||| |||||| |||||||||| || |||||||||| | |||||| |||||||| |||||||||||| |
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| T |
4298425 |
atgccacaatgtaagcaaccttgcacgtgaaaattcctgatcaaaattgaaaaagatttaacaacta |
4298359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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