View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9266_high_3 (Length: 646)
Name: NF9266_high_3
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_high_3 |
 | |
|
| [»] chr2 (8 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0159 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 581; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 15 - 646
Target Start/End: Complemental strand, 5827609 - 5826967
Alignment:
| Q |
15 |
aattttataggatacaacctgttacgactatccatttatatgcaaa-----------tagaaaaagaaaatcaaataaatataaatctatgatgcactaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827609 |
aattttataggatacaacctgttacgactatccatttatatgcaaaacatttgcaaatagaaaaagaaaatcaaataaatataaatctatgatgcactaa |
5827510 |
T |
|
| Q |
104 |
tgtgaagagcaaccaatgaagcataaactccaccatcaatcttcatcaacaaatcatgtctacctttctcagcaatcaccccatttttcactacagcgat |
203 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827509 |
tgtgaagagcaaccaatgaagcataaattccaccatcaatcttcatcaacaaatcatgtctacccttctcagcaatcaccccatttttcactacagcgat |
5827410 |
T |
|
| Q |
204 |
aatatcagcacctttaatcgttgcaagacgatgagccacaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacacgttctgac |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827409 |
aatatcagcacctttaatcgttgcaagacgatgagccacaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacacgttctgac |
5827310 |
T |
|
| Q |
304 |
tcagcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgata |
403 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827309 |
tcagcatcgagtgcactggttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgata |
5827210 |
T |
|
| Q |
404 |
actgtgtgcctctttcgcctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatc |
503 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827209 |
actgtgtgcctctttcgcctaccgaagtattgtaaccacctggaagagagcttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatc |
5827110 |
T |
|
| Q |
504 |
ctccgtagcacctccttctttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaac |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5827109 |
ctccgtagcacctccttctttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaac |
5827010 |
T |
|
| Q |
604 |
cagcttagtttgaaagttttgatattcagtccatctagtaata |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5827009 |
cagcttagtttgaaagttttgatattcagtccatctagtaata |
5826967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 106 - 646
Target Start/End: Complemental strand, 5769054 - 5768514
Alignment:
| Q |
106 |
tgaagagcaaccaatgaagcataaactccaccatcaatcttcatcaacaaatcatgtctacctttctcagcaatcaccccatttttcactacagcgataa |
205 |
Q |
| |
|
|||||||| || |||||||||||||| ||| || |||||||||||||| |||||||| || || ||||| | |||||||||||| | || || ||| |
|
|
| T |
5769054 |
tgaagagctactaatgaagcataaacaccatcagtaatcttcatcaacacttcatgtcttcccttttcagccaccaccccatttttaatcacggctatag |
5768955 |
T |
|
| Q |
206 |
tatcagcacctttaatcgttgcaagacgatgagccacaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacacgttctgactc |
305 |
Q |
| |
|
||||||| ||| ||| |||| |||||| |||||||| || |||||||||||||| ||||| |||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
5768954 |
tatcagcccctcgaattgttgtaagacggtgagccaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactc |
5768855 |
T |
|
| Q |
306 |
agcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataac |
405 |
Q |
| |
|
|||||| |||||||| || ||||| ||||| ||||||||| | |||||||||| || ||||||||||| || ||||| || || ||||| ||||||| | |
|
|
| T |
5768854 |
agcatcaagtgcacttgtcgcctcgtcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagc |
5768755 |
T |
|
| Q |
406 |
tgtgtgcctctttcgcctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcct |
505 |
Q |
| |
|
|||||||||||||| || || || || | |||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5768754 |
tgtgtgcctctttccccgacagaggtgtcataaccatttggaagagagcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcct |
5768655 |
T |
|
| Q |
506 |
ccgtagcacctccttctttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaacca |
605 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768654 |
ccatagcacctccttctttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaacca |
5768555 |
T |
|
| Q |
606 |
gcttagtttgaaagttttgatattcagtccatctagtaata |
646 |
Q |
| |
|
||||||| |||||||||| |||| || |||||||||||||| |
|
|
| T |
5768554 |
gcttagtctgaaagtttttatatccactccatctagtaata |
5768514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 136 - 420
Target Start/End: Complemental strand, 5795069 - 5794793
Alignment:
| Q |
136 |
ccatcaatcttcatcaacaaatcatgtctacctttctcagcaatcaccccatttttcactacagcgataatatcagcacctttaatcgttgcaagacgat |
235 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
5795069 |
ccatcaatcttcatcaataaatcatgtctacccttctcagtaatcaccccatttttcacaacagctatgatatcagcacctttaatcgttgcaagacgat |
5794970 |
T |
|
| Q |
236 |
gagccacaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacacgttctgactcagcatcgagtgcactagttgcctcatcaag |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5794969 |
gagccacaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacatgttctgactcagcatcgagtgcactggttgcctcatcaag |
5794870 |
T |
|
| Q |
336 |
taaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcg |
420 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5794869 |
taaaagtattctagggtctttcaatatagctcttgca--------acattgtttttgtccacctggtaactgtgtgcctctttcg |
5794793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 106 - 646
Target Start/End: Original strand, 5829394 - 5829934
Alignment:
| Q |
106 |
tgaagagcaaccaatgaagcataaactccaccatcaatcttcatcaacaaatcatgtctacctttctcagcaatcaccccatttttcactacagcgataa |
205 |
Q |
| |
|
|||||||| || |||||||||||||| ||| || |||| |||||||| ||||||||| || || ||||| | | |||||||||| | ||| || ||| |
|
|
| T |
5829394 |
tgaagagctactaatgaagcataaacaccatcagtaatcctcatcaactcatcatgtcttcccttttcagccaccgccccatttttaattaccgctatag |
5829493 |
T |
|
| Q |
206 |
tatcagcacctttaatcgttgcaagacgatgagccacaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacacgttctgactc |
305 |
Q |
| |
|
||||||| ||| ||| |||| |||||| ||||| || || |||||||||||||| ||||| |||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
5829494 |
tatcagcccctcgaattgttgtaagacggtgagctaccaccacagtagttctgttcacactcactctatctagagcctcttgaactatacgctctgactc |
5829593 |
T |
|
| Q |
306 |
agcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataac |
405 |
Q |
| |
|
|||||| |||||||| || ||||||||||| ||||||||| | |||||||| | || | ||||||||| || || || || || ||||| || || | |
|
|
| T |
5829594 |
agcatcaagtgcacttgtcgcctcatcaagcaaaagtattttggggttttttagcatggttcttgcaatagcaatgcgctgcttctgtcctccggacagt |
5829693 |
T |
|
| Q |
406 |
tgtgtgcctctttcgcctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcct |
505 |
Q |
| |
|
|| ||||||||||| || || || || | || ||| |||||||| ||||| ||| |||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
5829694 |
tgcgtgcctctttctccaacagacgtgtcatatccatctggaagattacttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcct |
5829793 |
T |
|
| Q |
506 |
ccgtagcacctccttctttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaacca |
605 |
Q |
| |
|
| |||||||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
5829794 |
ctgtagcacccccttcttttccataacctatgttagcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaccccatttgttgtctcaacca |
5829893 |
T |
|
| Q |
606 |
gcttagtttgaaagttttgatattcagtccatctagtaata |
646 |
Q |
| |
|
||||| | |||||||||||| || || |||||||||||||| |
|
|
| T |
5829894 |
gcttaatctgaaagttttgagatccactccatctagtaata |
5829934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 283 - 398
Target Start/End: Complemental strand, 5823627 - 5823512
Alignment:
| Q |
283 |
tcttgaactacacgttctgactcagcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatac |
382 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | |||||| ||||| |||||||| | ||| ||||| || || |||||||| || ||||||||||| || | |
|
|
| T |
5823627 |
tcttgaacaacacgttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattc |
5823528 |
T |
|
| Q |
383 |
gttgtttttgtccacc |
398 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
5823527 |
tttgcttttgtccacc |
5823512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 398
Target Start/End: Complemental strand, 5766234 - 5766119
Alignment:
| Q |
283 |
tcttgaactacacgttctgactcagcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatac |
382 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | |||||| ||||| ||||| || | ||| ||||| ||||| |||||||| || || |||||||| || | |
|
|
| T |
5766234 |
tcttgaacaacacgttcagactcagcatccaatgcacttgttgcttcatcgagaagaaggattcttgggttcttcaatattgccctagcaattgcaattc |
5766135 |
T |
|
| Q |
383 |
gttgtttttgtccacc |
398 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
5766134 |
tttgcttttgtccacc |
5766119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 5831973 - 5832088
Alignment:
| Q |
283 |
tcttgaactacacgttctgactcagcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatac |
382 |
Q |
| |
|
|||||||| | |||||| ||||| ||||| | |||||| ||||| |||||||| | ||| ||| | ||||| |||||||| || ||||||||||| || | |
|
|
| T |
5831973 |
tcttgaacaatacgttcagactccgcatccaatgcacttgttgcttcatcaagaagaaggatttttgggttcttcaatattgcccttgcaattgcaattc |
5832072 |
T |
|
| Q |
383 |
gttgtttttgtccacc |
398 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
5832073 |
tttgcttttgtccacc |
5832088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 5782251 - 5782219
Alignment:
| Q |
188 |
ttttcactacagcgataatatcagcacctttaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5782251 |
ttttcactacagcgataatatcagcacctttaa |
5782219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 106 - 646
Target Start/End: Original strand, 29326908 - 29327448
Alignment:
| Q |
106 |
tgaagagcaaccaatgaagcataaactccaccatcaatcttcatcaacaaatcatgtctacctttctcagcaatcaccccatttttcactacagcgataa |
205 |
Q |
| |
|
|||||||| || |||||||||||||| ||| | | | ||||||||| ||||||||| || || ||||||| || ||||||||| | ||| || ||| |
|
|
| T |
29326908 |
tgaagagctactaatgaagcataaacaccatgagtattgttcatcaactcatcatgtcttcccttttcagcaaccatcccattttttattactgctatag |
29327007 |
T |
|
| Q |
206 |
tatcagcacctttaatcgttgcaagacgatgagccacaacaacagtagttctgttaacactgactctatctaaagcctcttgaactacacgttctgactc |
305 |
Q |
| |
|
||||||| ||| ||| |||| ||||||||||||||| | |||||||||||||| | ||| |||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
29327008 |
tatcagcgcctcgaattgttgtaagacgatgagccacgatgacagtagttctgttcaaactcactctatctagagcctcttgaactatacgctctgactc |
29327107 |
T |
|
| Q |
306 |
agcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataac |
405 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||| |||||||||||| || ||||||||||| || || || || || ||||| || |||| |
|
|
| T |
29327108 |
ggcatcaagtgcacttgttgcctcatcaagcaaaagtattttagggtttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagt |
29327207 |
T |
|
| Q |
406 |
tgtgtgcctctttcgcctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcct |
505 |
Q |
| |
|
||||||||||||||||| || || || | |||||| | |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
29327208 |
tgtgtgcctctttcgccaacagaagtgtcataaccatcaggaagagaacttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcct |
29327307 |
T |
|
| Q |
506 |
ccgtagcacctccttctttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaacca |
605 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29327308 |
ccgtagcaccatcttctttaccataagctatgttggcgcgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaacca |
29327407 |
T |
|
| Q |
606 |
gcttagtttgaaagttttgatattcagtccatctagtaata |
646 |
Q |
| |
|
||||| | ||||||||||||||| || |||||||||||||| |
|
|
| T |
29327408 |
gcttattctgaaagttttgatatccactccatctagtaata |
29327448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 3431216 - 3431268
Alignment:
| Q |
352 |
tttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataa |
404 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||| ||||||||||| ||||| |
|
|
| T |
3431216 |
tttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccagataa |
3431268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 51149193 - 51149117
Alignment:
| Q |
301 |
gactcagcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgc |
377 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||| |||||| | || || |||| ||||||||| |||||||| |
|
|
| T |
51149193 |
gactcagcatcaagtgcactagttgcttcatctagtaatagtatttttggattcttcactatagctctcgcaattgc |
51149117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 51160056 - 51159980
Alignment:
| Q |
301 |
gactcagcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgc |
377 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||| |||||| | || || |||| |||||||| ||||||||| |
|
|
| T |
51160056 |
gactcagcatcaagtgcactagttgcttcatctagtaatagtatttttggattcttcactatagctcgtgcaattgc |
51159980 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 301 - 377
Target Start/End: Complemental strand, 51202755 - 51202679
Alignment:
| Q |
301 |
gactcagcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgc |
377 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||| |||||| | || || |||| ||||||||| |||||||| |
|
|
| T |
51202755 |
gactcagcatcaagtgcactagttgcttcatctagtaatagtatttttggattcttcactatagctctcgcaattgc |
51202679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 29933973 - 29934017
Alignment:
| Q |
301 |
gactcagcatcgagtgcactagttgcctcatcaagtaaaagtatt |
345 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||| |||||| |
|
|
| T |
29933973 |
gactcagcatcaagtgcactagttgcttcatctagtaatagtatt |
29934017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 27583 - 27551
Alignment:
| Q |
188 |
ttttcactacagcgataatatcagcacctttaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27583 |
ttttcactacagcgataatatcagcacctttaa |
27551 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 35714 - 35682
Alignment:
| Q |
188 |
ttttcactacagcgataatatcagcacctttaa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35714 |
ttttcactacagcgataatatcagcacctttaa |
35682 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 274 - 374
Target Start/End: Complemental strand, 27731371 - 27731271
Alignment:
| Q |
274 |
tctaaagcctcttgaactacacgttctgactcagcatcgagtgcactagttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaa |
373 |
Q |
| |
|
|||||||| | ||| || |||||||| || || |||| |||||||| ||||| |||||||| || | |||| |||||||| | || ||||||||||||| |
|
|
| T |
27731371 |
tctaaagcttgttgtacaacacgttccgattcgacatctagtgcacttgttgcttcatcaagcaataatattttagggtttcttaaaatagctcttgcaa |
27731272 |
T |
|
| Q |
374 |
t |
374 |
Q |
| |
|
| |
|
|
| T |
27731271 |
t |
27731271 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 17872391 - 17872447
Alignment:
| Q |
370 |
gcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgcctacc |
426 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || | |||||||| |||||| |
|
|
| T |
17872391 |
gcaattgctattctttgtttttgtccacctgataattgaatccctctttctcctacc |
17872447 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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