View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9266_high_6 (Length: 562)
Name: NF9266_high_6
Description: NF9266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9266_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 547
Target Start/End: Complemental strand, 42349765 - 42349237
Alignment:
| Q |
11 |
attatactatactgcgtgaatttgttttgccttttttgc----ctggtgacagatttgcatgaattataacttataagtcgtcttgcatctcannnnnnn |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
42349765 |
attatactatactgcgtgaatttgttttgccttttttgcttgcctggtgacagatttgcatgaattataagtt-------gtcttgcatctcatttt--- |
42349676 |
T |
|
| Q |
107 |
attatattatatcttataacaatcttatagaaaaagtatcatatcccaactccatgacccttcctctcaaactcttcacaaaaatgctactatttggtgg |
206 |
Q |
| |
|
|| | |||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42349675 |
-ttttgttatat--tata----tcttatagaaaaagtatcatatcccaactccataacccttcctctcaaactcttcacaaaaatgctactatttggtgg |
42349583 |
T |
|
| Q |
207 |
aaagacttgtgtgaacttgggaagagaggggaagatcaaaatcggttcttcgagtttgtaaagnnnnnnnntaggcaatgacgatcataccaaattttag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
42349582 |
aaagacttgtgtgaacttgggaagagaggg-aagatcaaaatcggttc---gagtttgtaaagaaaaaaa-taggcaatgacgatcataccaaattttgg |
42349488 |
T |
|
| Q |
307 |
gatgatgtttagttaatgaacaaggcgcttag-------tttccaatgttattttccttgtctgtctgaaaatattgtagcattagtgagatgtgatccg |
399 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
42349487 |
gatgatgtttggttgatgaacaaggcgcttagaaaagtctttccaatattattttccttgtctgtccgaaaatcttgtagcattagtgagatgtgatccg |
42349388 |
T |
|
| Q |
400 |
tgggggaaaggacgtcgagttgggatttcaagtggtgggagaatttctttaaatg-ggaaaaaatatttattccaagagctatggggccgcattga-ggg |
497 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
42349387 |
tgggggaaaggtcatcgagttgggatttcaagtggtggaagaatttctttaaatgagaaaaaaatatttattccaagagttatggggctgcattgacggg |
42349288 |
T |
|
| Q |
498 |
gtctttaattggccttgaagatga-ccattgggtttgggtgcttgactatt |
547 |
Q |
| |
|
|| |||||||| || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42349287 |
gtttttaattgaccctgaagatgacccattgggtttgggtgcttgactatt |
42349237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University